View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8482_high_1 (Length: 240)
Name: NF8482_high_1
Description: NF8482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8482_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 6885959 - 6886111
Alignment:
| Q |
1 |
cctaaccatgatgacataaaaattccaactaggaagatgaaagtgatggatgtaacaaatccgagacctgcccaattaatcaaattttgtaacatatgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6885959 |
cctaaccatgatgacataaaaattccaactaggaagatgaaagtgatggatgtaacaaatccgagacctgcccaattaatcaaattttgtaacatatgat |
6886058 |
T |
|
| Q |
101 |
atgatatttcttattttcttgcaagagatatatatttgtattcaaccttaaaa |
153 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6886059 |
atgatatttcttatttttttgcaagagatatatatttgtattcaaccttaaaa |
6886111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 6886197 - 6886251
Alignment:
| Q |
167 |
ttgtattcaagtttatcaaatgaatgtatgccgcttgattttgcaagggatatat |
221 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6886197 |
ttgtattcaagtttatcaaatgaatctatgccgcttgattttgcaagggatatat |
6886251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University