View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8483_high_11 (Length: 256)
Name: NF8483_high_11
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8483_high_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27292012 - 27292250
Alignment:
| Q |
1 |
ttccataaccagcatcgaagctcccaacctttatagatacaaagacaagatgttacaaaagatgaagagtggccgaaaataaactttcttatcttgtgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
27292012 |
ttccataaccagcatcgaagctcccaacctttatagatacaaagacaagatgttacaaaagatgaagaggggccgaaaataaactttcctatcttgtgat |
27292111 |
T |
|
| Q |
101 |
taaatgtttgatgactacaaatgttaaaatgaaaatggcaaattatcgaagcaccttaggaccggtttggccaaagatagcattatctgctgcaatggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27292112 |
taaatgtttgatgactacaaatgttaaaatgaaaatggcaaattatcgaagcaccttaggaccggtttggccaaagatagcattatctgctgcaatggtt |
27292211 |
T |
|
| Q |
201 |
agatcacaaaccatatgcaatatatgccctcctccaaca |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27292212 |
agatcacaaaccatatgcaatatatgccctcctccaaca |
27292250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 89 - 237
Target Start/End: Original strand, 26162756 - 26162903
Alignment:
| Q |
89 |
ttatcttgtgattaaatgtttgatgactacaaatgttaaaatgaaaatggcaaattatcgaagcaccttaggaccggtttggccaaagatagcattatct |
188 |
Q |
| |
|
||||||||||| |||||||||||||| || || |||| ||||||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||| |
|
|
| T |
26162756 |
ttatcttgtgactaaatgtttgatgagtaaaattgttcaaatgaaaa-ggcaaattatcgaagcaccttaggaccagtttggccagaggtagcattatct |
26162854 |
T |
|
| Q |
189 |
gctgcaatggttagatcacaaaccatatgcaatatatgccctcctccaa |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26162855 |
gctgcaatggttagatcacaaaccatatgcaatatatgcccccctccaa |
26162903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University