View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8483_high_12 (Length: 241)
Name: NF8483_high_12
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8483_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4723060 - 4722837
Alignment:
| Q |
1 |
tcgaataaatcaggaaagaaaggtgattaagtcannnnnnnnaatccctttttcttcaatatttggtaatcgtgcctaaattactacaagtgattcatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4723060 |
tcgaataaatcaggaaagaaaggtgattaagtatttttttttaatccctttttcttcaatatttggtaatcgtgcctaaattactacaagtgattcatta |
4722961 |
T |
|
| Q |
101 |
gtgtcccattgattcacaaaataatcaagcataatgtcttggtgcttaacactatattttgatcataaccccttaatatcttaggtgagtcggtgttcat |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4722960 |
gtatcccattgattcacaaaataatcaagcataatgtcttggtgcttaacactatattttgatcataaccccctaatatcttaggtgagtcggtgttcat |
4722861 |
T |
|
| Q |
201 |
tgaaagtttttaagaacatcaaat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4722860 |
tgaaagtttttaagaacatcaaat |
4722837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University