View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8483_high_2 (Length: 504)
Name: NF8483_high_2
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8483_high_2 |
 | |
|
| [»] scaffold0194 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 7564199 - 7564687
Alignment:
| Q |
1 |
gcaaaggttcttcctatttacttatttatttttatctatctcaactatttaatttttacccttcatgttaaagaagttttattacttattattaattgca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7564199 |
gcaaaggttcttcctgtttacttatttatttttatctatctcaactatttaatttttacccttcatgttaaagaagttttattacttattattaattgca |
7564298 |
T |
|
| Q |
101 |
ttttgaaatgtaggttgctgattttggattggctaagttgacatctgataataatactcacgtatcaactcgtgtaatgggaacttttgggtaannnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7564299 |
ttttgaaatgtaggttgctgattttggattggctaagttgacatctgataataatactcacgtatcaactcgtgtaatgggaacttttgggtaatttttg |
7564398 |
T |
|
| Q |
201 |
nnnnnnnnnnnnnnnnnggttattaattgtataaacttatatatgtataatatggtttgcttcatatataccaattaatatgtannnnnnncatgttaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
7564399 |
ttttttccactttttgtggttattaattgtataaacttatatatgtataatatggtttgtttcatatataccaattaatatgtatttttttcatgttaac |
7564498 |
T |
|
| Q |
301 |
ttaggtatctagcccctgaatatgcatcaagtggaaaattgacagagaagtccgacgttttctcatttggggtcatgctattggaacttgtaactgggaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7564499 |
ttaggtatctagcccctgaatatgcatcaagtggaaaattgacagagaagtccgacgttttctcatttggggtcatgctattggaacttgtaactgggaa |
7564598 |
T |
|
| Q |
401 |
gcgacctgtggatgcctcaattaccatggacgatagcttagtcgactgggttggtatttgattttaagtctatcacttatcttatgact |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7564599 |
gcgacctgtggatgcctcaattaccatggacgatagcttagtcgactgggttggtatttgattttaagtctatcacttatcttatgact |
7564687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 33144946 - 33144851
Alignment:
| Q |
302 |
taggtatctagcccctgaatatgcatcaagtggaaaattgacagagaagtccgacgttttctcatttggggtcatgctattggaacttgtaactgg |
397 |
Q |
| |
|
||||||| | ||||| |||||||||||||||||||||||||||||||| || || ||||| ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
33144946 |
taggtatatggccccagaatatgcatcaagtggaaaattgacagagaaatctgatgttttttcatttggggttatgctattagaactcttaactgg |
33144851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 33145136 - 33145053
Alignment:
| Q |
111 |
taggttgctgattttggattggctaagttgacatctgataataatactcacgtatcaactcgtgtaatgggaacttttgggtaa |
194 |
Q |
| |
|
||||| |||||||||||||||||||||||||| | |||| |||||| || || ||||||||||| |||||||| || |||||| |
|
|
| T |
33145136 |
taggtggctgattttggattggctaagttgactaccgatactaatacacatgtctcaactcgtgtcatgggaacattcgggtaa |
33145053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 14740 - 14691
Alignment:
| Q |
303 |
aggtatctagcccctgaatatgcatcaagtggaaaattgacagagaagtc |
352 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
14740 |
aggtatgttgcccctgaatatgcatcaagtggaaaattgactgacaagtc |
14691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University