View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8483_high_3 (Length: 487)
Name: NF8483_high_3
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8483_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 32 - 472
Target Start/End: Complemental strand, 3636282 - 3635842
Alignment:
| Q |
32 |
agcaatatcactttggttagttgaaagtggtgtcgaattacagttttggttaacatcttggttttgtaagatcatgctataagtcttaagacaagtatgc |
131 |
Q |
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| T |
3636282 |
agcaatatcactttggttagttgaaagtggtgtcgaattacagttttggttaacatcttggttttgtaagatcatgctataagtcttaagacaagtatgc |
3636183 |
T |
|
| Q |
132 |
tcaaccctggttaacttctcagacatttgttcgacaacctctgttgaagtaagtagaatatcttttccatctattatagatgtgattttctcgtctctac |
231 |
Q |
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| T |
3636182 |
tcaaccctggttaacttctcagacatttgttcgacaacctctgttgaagtaagtagaatatcttttccatctattatagatgtgattttctcgtctctac |
3636083 |
T |
|
| Q |
232 |
agtcgaatgtagtattcttatctgagatcctttgacaattgtccacctcaaagtcagagactaacggggccaaatactctatatcgttttctttgtcaat |
331 |
Q |
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| T |
3636082 |
agtcgaatgtagtattcttatctgagatcctttgacaattgtccacctcaaagtcagagactaacggggccaaatactctatatcgttttctttgtcaat |
3635983 |
T |
|
| Q |
332 |
atgagttttgtaattgtcatgttctgaagcaaagctacatggaacaactgaacaaagaggatcgttcaatgacagactagaacatccaaccatatcttga |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3635982 |
atgagttttgtaattgtcatgttctgaagcaaagctacatggaacaactgaacaaagaggatcgttcaatgacagactagaacatccaaccatatcttga |
3635883 |
T |
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| Q |
432 |
gaatgcaatacaccctcatcgggtttgttgtgtgaaccttc |
472 |
Q |
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| T |
3635882 |
gaatgcaatacaccctcatcgggtttgttgtgtgaaccttc |
3635842 |
T |
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