View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8483_low_11 (Length: 284)
Name: NF8483_low_11
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8483_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 32898605 - 32898348
Alignment:
| Q |
18 |
caaatgaaagcatgatttcatgtgacatatatacttacaatgagataaaccatataactaaaataagttttctaccgtgcgttcagataccataccccaa |
117 |
Q |
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| T |
32898605 |
caaatgaaagcatgacttcatgtgacatatatacttacaatgagataaaccatacaactaaaataagttttctagcgtgtgttcagataccataccccaa |
32898506 |
T |
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| Q |
118 |
aacatagccgaaatagttttccc-tgacataaatgcagaacctacaacatttttgcagtcatgtgtgattagtataaatgaggtagaaaccatcaaaaga |
216 |
Q |
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| T |
32898505 |
aacatagccgaaatagttttcccctaacataaatgcagaacctacaacatttttgcagtcatgtgtgattagtataaatgaggtagaaaccatcaaaaga |
32898406 |
T |
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| Q |
217 |
tggaagtctgaaaagcaatcttactaccgttgtcaaaatatgtattaatgtcttcatc |
274 |
Q |
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| T |
32898405 |
tggaagtctgaaaagcaatcttactaccgtagtcaaaatatgtattaatgtcttcatc |
32898348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 39160679 - 39160623
Alignment:
| Q |
184 |
attagtataaatgaggtagaaaccatcaaaagatggaagtctgaaaagcaatcttac |
240 |
Q |
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| T |
39160679 |
attagtataaatgaagtagaagacatcaaagaattgaagtctgaaaagaaatcttac |
39160623 |
T |
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