View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8483_low_15 (Length: 240)

Name: NF8483_low_15
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8483_low_15
NF8483_low_15
[»] chr7 (2 HSPs)
chr7 (1-99)||(4562946-4563045)
chr7 (152-235)||(4562804-4562887)
[»] chr4 (1 HSPs)
chr4 (180-233)||(13948620-13948673)
[»] chr1 (2 HSPs)
chr1 (180-231)||(24801441-24801492)
chr1 (183-236)||(28724735-28724788)
[»] chr6 (2 HSPs)
chr6 (180-233)||(12411208-12411261)
chr6 (187-232)||(29185360-29185405)
[»] chr5 (1 HSPs)
chr5 (187-236)||(30785011-30785060)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 4563045 - 4562946
Alignment:
Q  1 ggaaacaaagttaggacaattgtgtttacgtttgttgggtcggtccaaca-atgtccatgtttacggcgaatttttatatgagactctttaaagctcgta 99  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4563045 ggaaacaaagttcggacaattgtgtttacgtttgttggatcggtccaacacatgtccatgtttaaggcgaatttttatatgagactctttaaagctcgta 4562946  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 4562887 - 4562804
Alignment:
Q  152 gatacaaaatcataaattaagctaataacagcagtgttaaaactcttaggaagaatttaccgtccatttaagtctcacaatgtt 235  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4562887 gatacaaaatcataaattaagctaatgacagcagtgttaaaactcttaggaagaacttaccgtccatttaagtctcacaatgtt 4562804  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 13948673 - 13948620
Alignment:
Q  180 cagcagtgttaaaactcttaggaagaatttaccgtccatttaagtctcacaatg 233  Q
    |||||||||||||||||||||| ||| | |||||||||||| | ||||||||||    
T  13948673 cagcagtgttaaaactcttagggagagtctaccgtccatttgaatctcacaatg 13948620  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 24801441 - 24801492
Alignment:
Q  180 cagcagtgttaaaactcttaggaagaatttaccgtccatttaagtctcacaa 231  Q
    ||||| |||||||||||||||| ||| |||||||||||||| |||| |||||    
T  24801441 cagcactgttaaaactcttagggagagtttaccgtccatttgagtcccacaa 24801492  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 28724735 - 28724788
Alignment:
Q  183 cagtgttaaaactcttaggaagaatttaccgtccatttaagtctcacaatgttc 236  Q
    ||||||||||||||||||||||| | | |||||||||| ||||  |||||||||    
T  28724735 cagtgttaaaactcttaggaagagtctgccgtccatttgagtcctacaatgttc 28724788  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 12411208 - 12411261
Alignment:
Q  180 cagcagtgttaaaactcttaggaagaatttaccgtccatttaagtctcacaatg 233  Q
    |||||| ||||||||||||||||||| | | ||| ||||||||||| |||||||    
T  12411208 cagcagcgttaaaactcttaggaagagtctgccgcccatttaagtcccacaatg 12411261  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 29185360 - 29185405
Alignment:
Q  187 gttaaaactcttaggaagaatttaccgtccatttaagtctcacaat 232  Q
    ||||||||||||||| ||||| || |||||||||| ||||||||||    
T  29185360 gttaaaactcttagggagaatatatcgtccatttaggtctcacaat 29185405  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 30785060 - 30785011
Alignment:
Q  187 gttaaaactcttaggaagaatttaccgtccatttaagtctcacaatgttc 236  Q
    ||||||||||||||| ||||| | || |||||||| ||||||||||||||    
T  30785060 gttaaaactcttagggagaatctgccatccatttaggtctcacaatgttc 30785011  T

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