View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8483_low_17 (Length: 228)
Name: NF8483_low_17
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8483_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 35426523 - 35426739
Alignment:
| Q |
1 |
ttcttagcattgagtgaagtgtgaaaagcaattttcctaatttttaagagaattgagtcaataagattaacattaaatacccctttctgtcccctccccc |
100 |
Q |
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| T |
35426523 |
ttcttagcattgagtgaagtgtgaaaagcaattttcctaatttttaagagaattgagtcaataagattaacattaaatacccctttctgtcccctccccc |
35426622 |
T |
|
| Q |
101 |
tcattttctccattacataaggaattttatggctgtttctagaagaaacataaaacgtgatgaggactttgagttgctagtctccgataagtggaattct |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35426623 |
ccattttctccattacataaggaattttaaggctgtttctagaagaaacataaaacgtgatgaggactttgagttgctagtctccgataagtggaattct |
35426722 |
T |
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| Q |
201 |
tgttctctagagagtat |
217 |
Q |
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||||||||||||||||| |
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| T |
35426723 |
tgttctctagagagtat |
35426739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 28814817 - 28814849
Alignment:
| Q |
4 |
ttagcattgagtgaagtgtgaaaagcaattttc |
36 |
Q |
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| T |
28814817 |
ttagcattgagtgaagtttgaaaagcaattttc |
28814849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 33487218 - 33487183
Alignment:
| Q |
1 |
ttcttagcattgagtgaagtgtgaaaagcaattttc |
36 |
Q |
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| T |
33487218 |
ttcttagcattgagtaaagtgtgaaaagcaattttc |
33487183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29010138 - 29010179
Alignment:
| Q |
1 |
ttcttagcattgagtgaagtgtgaaaagcaattttcctaatt |
42 |
Q |
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| T |
29010138 |
ttcttagcattgaatgaagtgtgaaaagcatttttccaaatt |
29010179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1038445 - 1038477
Alignment:
| Q |
1 |
ttcttagcattgagtgaagtgtgaaaagcaatt |
33 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
1038445 |
ttcttagcattgagtgaagtgtgaaaagtaatt |
1038477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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