View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8483_low_4 (Length: 418)
Name: NF8483_low_4
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8483_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 7563819 - 7564034
Alignment:
| Q |
1 |
cgtgttcatcatcgccatcttgtttcacttgttggatattgtatttctggtggccaaagaatgttggtctatgaatttatttccaataacacattggagt |
100 |
Q |
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| T |
7563819 |
cgtgttcatcatcgtcatcttgtttcacttgttggatattgtatttctggtggccaaagaatgttggtctatgaatttatttccaataacacattggagt |
7563918 |
T |
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| Q |
101 |
atcatctccacggaaagggtcgtcctaccatggattggccgacgagaatgaggatcgcaattggttctgctaaagggcttgcttatcttcatgaggattg |
200 |
Q |
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| T |
7563919 |
atcatctccacggaaagggtcgtcctaccatggattggccgacgagaatgaggatcgcaattggttctgctaaagggcttgcttatcttcatgaggattg |
7564018 |
T |
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| Q |
201 |
tgagattcttgctccc |
216 |
Q |
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|||||||||||||||| |
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| T |
7564019 |
tgagattcttgctccc |
7564034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 314 - 404
Target Start/End: Original strand, 7564132 - 7564222
Alignment:
| Q |
314 |
aggtcatccacgcattatccatcgtgatataaaagctgcaaatgtccttattgatgatagctttgaagcaaaggttcttcctatttactta |
404 |
Q |
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| T |
7564132 |
aggtcatccacgcattatccatcgtgatataaaagctgcaaatgtccttattgatgatagctttgaagcaaaggttcttcctgtttactta |
7564222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 33145756 - 33145653
Alignment:
| Q |
1 |
cgtgttcatcatcgccatcttgtttcacttgttggatattgtatttctggtggccaaagaatgttggtctatgaatttatttccaataacacattggagt |
100 |
Q |
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| T |
33145756 |
cgtgttcatcatcgtcatcttgtgtcgcttgttggatattgtgtttctggtggacagagaatgttggtttatgaatttgttccaaataaaactttggaat |
33145657 |
T |
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| Q |
101 |
atca |
104 |
Q |
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|||| |
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| T |
33145656 |
atca |
33145653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 33145531 - 33145448
Alignment:
| Q |
124 |
cctaccatggattggccgacgagaatgaggatcgcaattggttctgctaaagggcttgcttatcttcatgaggattgtgagatt |
207 |
Q |
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| T |
33145531 |
cctaccatggattggcctactagaatgagaattgcattaggatctgctagaggacttgcttaccttcatgaagattgtaagatt |
33145448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 33145348 - 33145283
Alignment:
| Q |
324 |
cgcattatccatcgtgatataaaagctgcaaatgtccttattgatgatagctttgaagcaaaggtt |
389 |
Q |
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| T |
33145348 |
cgcattatccaccgtgatattaaggctgctaatgttctaattgatgatagcttcgaagctaaggtt |
33145283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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