View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8483_low_5 (Length: 414)
Name: NF8483_low_5
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8483_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 165 - 395
Target Start/End: Complemental strand, 32462348 - 32462118
Alignment:
| Q |
165 |
aagccatatgcttgaatctgctggaagtctcatagatatggaaatgttggtgatttgttgtgcatcaaagttattaaaatcttcaaaaactaaaattttc |
264 |
Q |
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| T |
32462348 |
aagccatatgcttgaatctgctggaagtctcatagctatggaaatattggtgatttgttgtgcatcaaagttattaaaatcttcaagaactaaaattttc |
32462249 |
T |
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| Q |
265 |
aattccattgctttgtacctgcatcaacaagctcactgatcctagcactttgatcaaggagtgactcaggtggagactttgaaattgtgtgtctcaggca |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32462248 |
aattccattgctttgtacctgcatcaacaagctcactgatcctagcactttgatcaaggagtgactcaggtggagactttgaaattgtgtttctcaggca |
32462149 |
T |
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| Q |
365 |
tccagatatcaccccaaatattaatctgttt |
395 |
Q |
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| T |
32462148 |
tccagatatcaccccaaatattaatctgttt |
32462118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 32462475 - 32462345
Alignment:
| Q |
1 |
aacctccaaaggaaattttacgcagtttggaatggagatataccacattgccatccacaaaccttatgctctaacattcgagcatcctagggtctgcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
32462475 |
aacctccaaaggaaattttacgcagtttggaatggagatataccacattgccatccacaaaccttatgctctaacattcgagcattctggggtctgcttc |
32462376 |
T |
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| Q |
101 |
tgtttttcctagtttagaaaaggtgataagc |
131 |
Q |
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| T |
32462375 |
tgtttttcctcgtttagaaaaggtgataagc |
32462345 |
T |
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