View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8483_low_6 (Length: 360)

Name: NF8483_low_6
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8483_low_6
NF8483_low_6
[»] chr5 (12 HSPs)
chr5 (1-352)||(15083646-15083995)
chr5 (1-352)||(15428653-15429004)
chr5 (4-344)||(15331879-15332220)
chr5 (1-347)||(16397368-16397714)
chr5 (129-352)||(15347829-15348052)
chr5 (129-352)||(16414821-16415044)
chr5 (127-349)||(15358096-15358318)
chr5 (129-352)||(15336456-15336676)
chr5 (1-109)||(16403960-16404068)
chr5 (1-110)||(17928291-17928400)
chr5 (4-123)||(15452724-15452843)
chr5 (131-191)||(17928427-17928487)
[»] chr3 (2 HSPs)
chr3 (146-352)||(8187946-8188152)
chr3 (8-92)||(8187808-8187892)


Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 15083646 - 15083995
Alignment:
Q  1 caattctcttgtttatcgtcccagacgtcatccaatacaagcaaaaatctttttccttgtagtagatcttgaagtcttctttgtagtggctctagatcca 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  15083646 caattctcttgtttatcgtcccaaacgtcatccaatacaagcaaaaatctttttccttgtagtagatgttgaagtcttctttgtagtggttctagatcca 15083745  T
Q  101 aatcttcacatgacttcttagtttccgcttctatgattgctttagtcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactcaaa 200  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  15083746 aatcttcacatgagttcttagtttccgcttcgatgattgctttagtcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactc--a 15083843  T
Q  201 gtgttggaccaccctttcatgattgaagataagttgggaaagtgttgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaaga 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15083844 gtgttggaccaccctttcatgattgaagataagttgggcaagtgttgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaaga 15083943  T
Q  301 ccagaagcttccctaaccaaaaaatctacaattttatccttatcttcatctc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15083944 ccagaagcttccctaaccaaaaaatctacaattttatccttatcttcatctc 15083995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 15429004 - 15428653
Alignment:
Q  1 caattctcttgtttatcgtcccagacgtcatccaatacaagcaaaaatctttttccttgtagtagatcttgaagtcttctttgtagtggctctagatcca 100  Q
    ||||||||||||||| ||||||| || || ||||||||||||||||||||||||||||| || || |||||||||||| ||||||||| |||||||||||    
T  15429004 caattctcttgtttaacgtcccatacatcgtccaatacaagcaaaaatctttttccttgaagcaggtcttgaagtcttgtttgtagtgtctctagatcca 15428905  T
Q  101 aatcttcacatgacttcttagtttccgcttctatgattgctttagtcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactcaaa 200  Q
    ||    ||||||||||||||| |  |||||| || || | ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| | ||||||    
T  15428904 aaataccacatgacttcttagatgtcgcttcgattatcgttttagtcattctcttcaaactaaaatcttctgaaacacaaacccaaattctcggctcaaa 15428805  T
Q  201 gtgttggaccaccctttcatgattgaagataagttgggaaagtgttgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaaga 300  Q
    ||||| ||||||||| || ||||||||||||||||||| |||||||||||| |||||||| |||| ||| ||||||||| | ||||||||||||||||||    
T  15428804 gtgtttgaccaccctctcgtgattgaagataagttgggcaagtgttgtttttccaagtccacctataccaacaattggataaacacacaaatcctcaaga 15428705  T
Q  301 ccagaagcttccctaaccaaaaaatctacaattttatccttatcttcatctc 352  Q
    ||||||||||| | ||||||||||||||||||||||||| |||||| |||||    
T  15428704 ccagaagcttcaccaaccaaaaaatctacaattttatccatatctttatctc 15428653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 344
Target Start/End: Original strand, 15331879 - 15332220
Alignment:
Q  4 ttctcttgtttatcgtcccagacgtcatccaatacaagcaaaaatctttttccttgtagtagatctt-gaagtcttctttgtagtggctctagatccaaa 102  Q
    ||||||||||| || | ||| || ||||| || ||||||||| || |||||| ||| | |||||||| ||||| |||||||||||||||| |||||||||    
T  15331879 ttctcttgtttttcattccacacatcatctaaaacaagcaaatatttttttctttgcaatagatctttgaagttttctttgtagtggctcaagatccaaa 15331978  T
Q  103 tcttcacatgacttcttagtttccgcttctatgattgctt-tagtcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactcaaag 201  Q
    || ||||| || ||||||||| | ||||| ||||| |||| |||||||||  || | ||||||||| |||||||||||||||||||||||    ||||||    
T  15331979 tcatcacaagatttcttagttgcagcttcaatgat-gcttctagtcattcttttgatactaaaatcatctgaaacacacacccacattctcagatcaaag 15332077  T
Q  202 tgttggaccaccctttcatgattgaagataagttgggaaagtgttgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaagac 301  Q
    |||| ||| || |||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||||| | ||  |||||||||||| ||    
T  15332078 tgtttgacaacactttcatgattgaatataagttgggcaagtgttgtttttccaagtccgcctagtcccacaattggataaaccgacaaatcctcaaaac 15332177  T
Q  302 cagaagcttccctaaccaaaaaatctacaattttatccttatc 344  Q
    |||||||  |  ||||||||| |||||| ||||||||| ||||    
T  15332178 cagaagcaccgttaaccaaaatatctaccattttatccctatc 15332220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 16397368 - 16397714
Alignment:
Q  1 caattctcttgtttatcgtcccagacgtcatccaatacaagcaaaaatctttttccttgtagtagatcttgaagtcttctttgtagtggctctagatcca 100  Q
    |||||||||||||| || | ||| ||||||||||| ||||||||  ||||||||| | | ||||||||||||||| ||||||| ||| |||||||||| |    
T  16397368 caattctcttgtttgtcattccacacgtcatccaaaacaagcaagtatctttttcttcgaagtagatcttgaagttttctttgaagtagctctagatcta 16397467  T
Q  101 aatcttcacatgacttcttagtttccgcttctatgattgctttagtcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactcaaa 200  Q
    |||| ||||| |||||||||||| || |||||||||| ||||| |||||||  || | | | |||||||||||||| |||||||| ||| |  |||||||    
T  16397468 aatcctcacaggacttcttagttgccccttctatgatggcttttgtcattctttttagagtgaaatcttctgaaacgcacacccaaatttttaactcaaa 16397567  T
Q  201 gtgttggaccaccctttcatgattgaagataagttgggaaagtgttgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaaga 300  Q
    ||| | ||| | | | |||||||||||||  ||||| | |||||||||||| || ||||| ||||| || ||||||||| ||||  | || |||||  |     
T  16397568 gtggttgactatcttgtcatgattgaagacgagttgagcaagtgttgttttacctagtccacctagcccaacaattggatagacggataagtcctcttgt 16397667  T
Q  301 ccagaagcttccctaaccaaaaaatctacaattttatccttatcttc 347  Q
     | ||||| || | ||||||||| |||||||||||||||||||||||    
T  16397668 tcggaagcatcaccaaccaaaaagtctacaattttatccttatcttc 16397714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 129 - 352
Target Start/End: Original strand, 15347829 - 15348052
Alignment:
Q  129 ttctatgattgctttagtcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactcaaagtgttggaccaccctttcatgattgaag 228  Q
    ||||||||| ||||| ||||||| ||||||||| |||||||||||||| || ||||| |||||   ||||||||  | ||| ||| | |||||||||||     
T  15347829 ttctatgatggcttttgtcattctcttcaaactgaaatcttctgaaacgcatacccaaattcttagctcaaagtagttgactaccttctcatgattgaac 15347928  T
Q  229 ataagttgggaaagtgttgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaagaccagaagcttccctaaccaaaaaatcta 328  Q
    | || ||||| ||||||||||||||||||||| |||| ||| ||||||||| | ||  | |||||||||| || |||||| ||   ||||||||| ||||    
T  15347929 acaatttgggcaagtgttgttttcccaagtccacctaaaccgacaattggataaactgataaatcctcaaaactagaagcatcatcaaccaaaaagtcta 15348028  T
Q  329 caattttatccttatcttcatctc 352  Q
    ||||||||  ||||||||||||||    
T  15348029 caattttactcttatcttcatctc 15348052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 129 - 352
Target Start/End: Original strand, 16414821 - 16415044
Alignment:
Q  129 ttctatgattgctttagtcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactcaaagtgttggaccaccctttcatgattgaag 228  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||||| |||||   ||||||||| | ||| |||||||||||||| |||    
T  16414821 ttctatgatggcttttgtcattctcttcaaactaaaatcttctgaaacacatacccaaattcttagctcaaagtggttgactaccctttcatgattaaag 16414920  T
Q  229 ataagttgggaaagtgttgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaagaccagaagcttccctaaccaaaaaatcta 328  Q
    || ||||||  ||||| |||||| || |  || |||||||| ||||||||| ||||    |||||  | | | ||||||| || | ||||||||| || |    
T  16414921 atcagttggacaagtgctgttttacccaaaccacctagacctacaattggatagactggtaaatctactaaaacagaagcatcaccaaccaaaaattcca 16415020  T
Q  329 caattttatccttatcttcatctc 352  Q
    ||||||||| ||| ||||||||||    
T  16415021 caattttattcttctcttcatctc 16415044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 127 - 349
Target Start/End: Original strand, 15358096 - 15358318
Alignment:
Q  127 gcttctatgattgctttagtcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactcaaagtgttggaccaccctttcatgattga 226  Q
    |||||||||||  |||| ||||||| ||||||||| ||||||||||||||||| ||||| |||||   ||||||||||| ||| ||| | ||||||||||    
T  15358096 gcttctatgatgccttttgtcattctcttcaaactgaaatcttctgaaacacatacccaaattcttagctcaaagtgtttgactaccttctcatgattga 15358195  T
Q  227 agataagttgggaaagtgttgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaagaccagaagcttccctaaccaaaaaatc 326  Q
    | | || ||||| ||||||||||||||||||||| || ||||| || | |||| ||||  | |||||||||  |  | | || ||   ||||||||| ||    
T  15358196 acacaacttgggcaagtgttgttttcccaagtccaccaagacctactactggatagactgataaatcctcacaagtatacgcatcatcaaccaaaaagtc 15358295  T
Q  327 tacaattttatccttatcttcat 349  Q
    |||||||| ||||||||||||||    
T  15358296 tacaatttgatccttatcttcat 15358318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 352
Target Start/End: Original strand, 15336456 - 15336676
Alignment:
Q  129 ttctatgattgctttagtcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactcaaagtgttggaccaccctttcatgattgaag 228  Q
    ||||||||| ||||| |||||||  |||||||| ||||||||||||||||| ||||| |||||    ||||| || | ||| || || ||||||||||||    
T  15336456 ttctatgatggcttttgtcattcttttcaaactgaaatcttctgaaacacatacccaaattcttagatcaaactggttgactacactctcatgattgaag 15336555  T
Q  229 ataagttgggaaagtgttgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaagaccagaagcttccctaaccaaaaaatcta 328  Q
    ||||||||||  | ||||||||| |||| ||| || | ||| ||||||||| | ||| | |||||||||| ||    | | |  ||||||||||| ||||    
T  15336556 ataagttgggtcaatgttgtttttccaattccaccaacaccgacaattggataaacagataaatcctcaaaac---taccattactaaccaaaaactcta 15336652  T
Q  329 caattttatccttatcttcatctc 352  Q
    ||||||||| ||||||||||||||    
T  15336653 caattttattcttatcttcatctc 15336676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 16403960 - 16404068
Alignment:
Q  1 caattctcttgtttatcgtcccagacgtcatccaatacaagcaaaaatctttttccttgtagtagatcttgaagtcttctttgtagtggctctagatcca 100  Q
    |||| ||||||||| | || ||| | ||||||||| ||||||||| ||||||||| | | |||||| ||||||||||| |||||||| ||||||||||||    
T  16403960 caatactcttgtttttggttccacaagtcatccaaaacaagcaaatatctttttcttcgaagtagaacttgaagtcttttttgtagtagctctagatcca 16404059  T
Q  101 aatcttcac 109  Q
    |||| ||||    
T  16404060 aatcctcac 16404068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 17928291 - 17928400
Alignment:
Q  1 caattctcttgtttatcgtcccagacgtcatccaatacaagcaaaaatctttttccttgtagtagatcttgaagtcttctttgtagtggctctagatcca 100  Q
    |||||||||||||  || ||||| |  |||||||| ||||||||| ||||||||| | | ||||| ||||| |||||||||||||| ||||||||||| |    
T  17928291 caattctcttgttcctcatcccacaaatcatccaaaacaagcaaatatctttttcttcgaagtagctcttgcagtcttctttgtaggggctctagatcta 17928390  T
Q  101 aatcttcaca 110  Q
    |||| |||||    
T  17928391 aatcctcaca 17928400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 15452843 - 15452724
Alignment:
Q  4 ttctcttgtttatcgtcccagacgtcatccaatacaagcaaaaatctttttccttgtagtagatcttgaagtcttctttgtagtggctctagatccaaat 103  Q
    |||||||||||||| | ||| || |||||||| |  |||||| ||||||||    | ||||  | ||||||| || ||||||||| ||||||||||||||    
T  15452843 ttctcttgtttatcattccacacatcatccaaaattagcaaatatctttttgtacgaagtaccttttgaagttttatttgtagtgtctctagatccaaat 15452744  T
Q  104 cttcacatgacttcttagtt 123  Q
    | | ||| ||||||||||||    
T  15452743 ccttacaagacttcttagtt 15452724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 17928427 - 17928487
Alignment:
Q  131 ctatgattgctttagtcattcgcttcaaactaaaatcttctgaaacacacacccacattct 191  Q
    |||||||  |||| ||||||| ||||| ||| ||||||||||||||| ||||||| |||||    
T  17928427 ctatgataacttttgtcattctcttcagactgaaatcttctgaaacagacacccaaattct 17928487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 146 - 352
Target Start/End: Original strand, 8187946 - 8188152
Alignment:
Q  146 tcattcgcttcaaactaaaatcttctgaaacacacacccacattctggactcaaagtgttggaccaccctttcatgattgaagataagttgggaaagtgt 245  Q
    |||||| ||||||||| |||||||| |||||||| ||||| |||||   ||||||||| | ||| | | | |||||||||||||| |||||||  |||||    
T  8187946 tcattctcttcaaactgaaatcttcagaaacacatacccaaattcttagctcaaagtggtcgactatcttctcatgattgaagatgagttgggtcagtgt 8188045  T
Q  246 tgttttcccaagtccgcctagacccacaattggacagacacacaaatcctcaagaccagaagcttccctaaccaaaaaatctacaattttatccttatct 345  Q
    |||||| |||||||| |||||||| || |||||| ||||| | ||||  | || ||||||||| || | ||| | ||| |||| |||||||||| |||||    
T  8188046 tgtttttccaagtccacctagaccaactattggatagacagataaattttgaaaaccagaagcatcaccaacaagaaagtctataattttatccctatct 8188145  T
Q  346 tcatctc 352  Q
    |||||||    
T  8188146 tcatctc 8188152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 8187808 - 8187892
Alignment:
Q  8 cttgtttatcgtcccagacgtcatccaatacaagcaaaaatctttttccttgtagtagatcttgaagtcttctttgtagtggctc 92  Q
    |||||| ||| ||||| || || ||||| || |||||| ||||||||| ||||| ||  |||  |||||||||||||||||||||    
T  8187808 cttgttcatcatcccacacatcgtccaaaacgagcaaatatctttttctttgtaatatttctacaagtcttctttgtagtggctc 8187892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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