View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8483_low_8 (Length: 335)
Name: NF8483_low_8
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8483_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 30234253 - 30234551
Alignment:
| Q |
15 |
attttgatgtatattgtattttcttggatccctcaatggagatggccaacactattttgcaacagatgatgctctatccgttaaattccttctagttttc |
114 |
Q |
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| T |
30234253 |
attttgatgtatattgtattttcttggatccctcaatggagatggccaaccctattttgcaacagatgatgctctatccattaaattccttctagttttc |
30234352 |
T |
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| Q |
115 |
ttttcctcatcttaaatgagnnnnnnnnnnnncttgctttaaaagaaacataactcttatatcctggtctttattataccactattatcaatgacatagt |
214 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30234353 |
atttcttcatcttaaatgagttttttcttgttcttgctttaaaagaaacataactcttatatcctggtctttattataccactattatcaatgacatagt |
30234452 |
T |
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| Q |
215 |
attcatctaggagagaatttattgtattgacatagacctaacacatagcattaagactcaacaattcgttggttaaaacatatcttgttagctgaatac |
313 |
Q |
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| T |
30234453 |
attcatctaggagagaatttattgtattgacatagacctaacacatagcattaagactcaacaattcgttggttaaaacatatcttgttagctgaatac |
30234551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 69 - 242
Target Start/End: Original strand, 31700573 - 31700743
Alignment:
| Q |
69 |
ttttgcaacagatgatgctctatccgttaaattccttctagttttcttttcctcatcttaaatgagnnnnnnnnnnnncttgctttaaaagaaacataac |
168 |
Q |
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| T |
31700573 |
ttttgcaacagataatgctttgtccattaaattccttctacttttcatttcttcatcttaaatgagatctttttttt-cttgctttaaaagaaacataac |
31700671 |
T |
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| Q |
169 |
tcttatatcctggtctttattataccactattatcaatgacatagtattcatctaggagagaatttattgtatt |
242 |
Q |
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| T |
31700672 |
tcttatctcctggtcttcataataccactattatcaatg--atagtattcatctaagagagaatttattgtatt |
31700743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 31682576 - 31682675
Alignment:
| Q |
182 |
tctttattataccactattatcaatgacatagtattcatctaggagagaatttattgtattgacatagacctaacacatagcattaagactcaacaattc |
281 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||| |||||||||| ||||||||||||||||||||| |
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| T |
31682576 |
tctttattataccactattatcaatgacatagcattcatctaagagagaatttcttgtgttgacataaacctaacacacagcattaagactcaacaattc |
31682675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 31694778 - 31694810
Alignment:
| Q |
22 |
tgtatattgtattttcttggatccctcaatgga |
54 |
Q |
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| T |
31694778 |
tgtatattgtattgtcttggatccctcaatgga |
31694810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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