View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8483_low_9 (Length: 317)

Name: NF8483_low_9
Description: NF8483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8483_low_9
NF8483_low_9
[»] chr1 (6 HSPs)
chr1 (95-313)||(32462471-32462689)
chr1 (9-73)||(32462686-32462750)
chr1 (160-204)||(15504712-15504756)
chr1 (152-196)||(29692321-29692365)
chr1 (143-204)||(48554822-48554883)
chr1 (130-203)||(52008977-52009049)
[»] chr5 (5 HSPs)
chr5 (127-250)||(32811918-32812041)
chr5 (152-196)||(13595834-13595878)
chr5 (152-196)||(22916302-22916346)
chr5 (152-204)||(3092709-3092760)
chr5 (130-190)||(21134457-21134517)
[»] chr2 (2 HSPs)
chr2 (134-204)||(33643666-33643736)
chr2 (138-253)||(2419915-2420029)
[»] chr6 (3 HSPs)
chr6 (164-260)||(34589839-34589936)
chr6 (161-221)||(6963746-6963806)
chr6 (162-241)||(34732284-34732363)
[»] chr7 (3 HSPs)
chr7 (93-190)||(23932795-23932891)
chr7 (152-196)||(25730077-25730121)
chr7 (134-194)||(34726588-34726648)
[»] chr8 (3 HSPs)
chr8 (152-195)||(6489727-6489770)
chr8 (127-201)||(11567662-11567736)
chr8 (147-196)||(37377412-37377461)
[»] chr4 (3 HSPs)
chr4 (173-267)||(16873143-16873238)
chr4 (108-264)||(20993565-20993722)
chr4 (130-222)||(52928739-52928834)
[»] chr3 (2 HSPs)
chr3 (147-206)||(3007781-3007840)
chr3 (153-260)||(44240614-44240723)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 95 - 313
Target Start/End: Complemental strand, 32462689 - 32462471
Alignment:
Q  95 aaacgaccgaaatacctaaatattgacgggagtaatctcttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgac 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32462689 aaacgaccgaaatacctaaatattgacgggagtaatctcttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgac 32462590  T
Q  195 taaattgactgacatggttcagtttaagagactatattgctactttataaatttgaggactaaattgaccaacaagaactaaaatatctatttactcgaa 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  32462589 taaattgactgacatggttcagtttaagagactatattgctactttataaatttgaggagtaaattgaccaacgagaactaaaatatctatttactcgaa 32462490  T
Q  295 caacaatccaaacaaacct 313  Q
    |||||||||||||||||||    
T  32462489 caacaatccaaacaaacct 32462471  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 32462750 - 32462686
Alignment:
Q  9 agtgagaagaagtaaatatgtagtttaatccttgaaattgtgaaggtcgatttggttcttcaaac 73  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32462750 agtgggaagaagtaaatatgtagtttaatccttgaaattgtgaaggtcgatttggttcttcaaac 32462686  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 15504712 - 15504756
Alignment:
Q  160 ctttaaaattgtggtgttaaatttgaaaaaatgactaaattgact 204  Q
    |||||||||||||||| |||||||||||| |||||||||||||||    
T  15504712 ctttaaaattgtggtgctaaatttgaaaatatgactaaattgact 15504756  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 29692365 - 29692321
Alignment:
Q  152 tatagaacctttaaaattgtggtgttaaatttgaaaaaatgacta 196  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
T  29692365 tatagaacatttaaaattgtggtgttaaatttgagaaaatgacta 29692321  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 48554883 - 48554822
Alignment:
Q  143 caagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgactaaattgact 204  Q
    |||||||| |||| ||||||||||| |||| ||||||||| ||||||| |||||| ||||||    
T  48554883 caagacaaatataaaacctttaaaactgtgatgttaaattcgaaaaaaggactaatttgact 48554822  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 52008977 - 52009049
Alignment:
Q  130 tctcttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgactaaattgac 203  Q
    |||||||||||| ||| ||||| ||||||||| |||| ||||| |||| ||| || ||||||||||||||||||    
T  52008977 tctcttgctgcatcaaaacaagcatagaacctctaaacttgtgatgttgaatatg-aaaaatgactaaattgac 52009049  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 250
Target Start/End: Original strand, 32811918 - 32812041
Alignment:
Q  127 taatctcttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgactaaattgactgacatggttcagtttaagagac 226  Q
    |||||||||| |||| ||||| ||  ||  |||||||||||||||| || |||||||| |||| | ||  |||||||| |||| ||||| ||||||||||    
T  32811918 taatctcttgttgcatcaagataacaatgaaacctttaaaattgtgatgctaaatttggaaaattaacataattgactaacattgttcaatttaagagac 32812017  T
Q  227 tatattgctactttataaatttga 250  Q
    || |||||||||| ||||||||||    
T  32812018 taaattgctacttcataaatttga 32812041  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 13595878 - 13595834
Alignment:
Q  152 tatagaacctttaaaattgtggtgttaaatttgaaaaaatgacta 196  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
T  13595878 tatagaacatttaaaattgtggtgttaaatttgagaaaatgacta 13595834  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 22916346 - 22916302
Alignment:
Q  152 tatagaacctttaaaattgtggtgttaaatttgaaaaaatgacta 196  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
T  22916346 tatagaacatttaaaattgtggtgttaaatttgagaaaatgacta 22916302  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 3092709 - 3092760
Alignment:
Q  152 tatagaacctttaaaattgtggtgttaaatttgaaaaaatgactaaattgact 204  Q
    |||||||||||||||||| | ||| |||||||| |||||||| ||||||||||    
T  3092709 tatagaacctttaaaattatagtgctaaatttg-aaaaatgattaaattgact 3092760  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 21134457 - 21134517
Alignment:
Q  130 tctcttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaa 190  Q
    ||||||| |||| ||||| ||  ||||||| ||||||||||||||| |||||||| |||||    
T  21134457 tctcttggtgcatcaagagaaacatagaacttttaaaattgtggtgctaaatttggaaaaa 21134517  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 33643666 - 33643736
Alignment:
Q  134 ttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgactaaattgact 204  Q
    |||||||||||||||||  ||| |||||||||| ||||||||||||||| ||||||||||||| |||||||    
T  33643666 ttgctgcaccaagacaatcataaaacctttaaacttgtggtgttaaattcgaaaaaatgactagattgact 33643736  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 253
Target Start/End: Original strand, 2419915 - 2420029
Alignment:
Q  138 tgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgactaaattgactgacatggttcagtttaagagactatattgctac 237  Q
    |||| ||| |||||| || |||||||||| ||||||||  ||||||||||||| ||||||||||| ||| ||  || | |||||||||||| |||||||     
T  2419915 tgcatcaaaacaagtgtaaaacctttaaa-ttgtggtgcaaaatttgaaaaaaagactaaattgattgatatttttaaatttaagagactaaattgctat 2420013  T
Q  238 tttataaatttgagga 253  Q
    || | |||||||||||    
T  2420014 ttcacaaatttgagga 2420029  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 34589936 - 34589839
Alignment:
Q  164 aaaattgtggtgttaaatttgaaaaaatgactaaattgactgacatggttcagtttaagagactatattgctactttataaatttga-ggactaaatt 260  Q
    |||||||||| |||||||||||| |||||| |  |||||||| ||| |||||||||||||||||| ||||||| || | ||| |||| ||||||||||    
T  34589936 aaaattgtggagttaaatttgaataaatgaatgtattgactggcattgttcagtttaagagactaaattgctagttcacaaaattgagggactaaatt 34589839  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 6963806 - 6963746
Alignment:
Q  161 tttaaaattgtggtgttaaatttgaaaaaatgactaaattgactgacatggttcagtttaa 221  Q
    ||||||||| || ||||||||| || ||||||||||||||||| ||||| ||||| |||||    
T  6963806 tttaaaattttgctgttaaattagagaaaatgactaaattgaccgacattgttcaatttaa 6963746  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 34732363 - 34732284
Alignment:
Q  162 ttaaaattgtggtgttaaatttgaaaaaatgactaaattgactgacatggttcagtttaagagactatattgctacttta 241  Q
    ||||||||||||||||||||||||| ||| ||||  ||||| ||   | ||||| |||||||||||| ||||||| ||||    
T  34732363 ttaaaattgtggtgttaaatttgaataaaggactgtattgattggtgttgttcaatttaagagactaaattgctagttta 34732284  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 23932795 - 23932891
Alignment:
Q  93 caaaacgaccgaaatacctaaatattgacgggagtaatctcttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaa 190  Q
    |||||| | ||||| ||||||||||||||   |||| ||||||||||||  |||||||| ||| |||||||||||||   ||||||||||||||||||    
T  23932795 caaaaccatcgaaagacctaaatattgactt-agtagtctcttgctgcattaagacaagcataaaacctttaaaattacagtgttaaatttgaaaaaa 23932891  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 25730121 - 25730077
Alignment:
Q  152 tatagaacctttaaaattgtggtgttaaatttgaaaaaatgacta 196  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||    
T  25730121 tatagaacatttaaaattgtggtgttaaatttgagaaaatgacta 25730077  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 34726648 - 34726588
Alignment:
Q  134 ttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgac 194  Q
    |||||||| ||| ||||| ||||||||||| |||||| | ||  |||||||||||||||||    
T  34726648 ttgctgcatcaaaacaagcatagaaccttttaaattgagatggaaaatttgaaaaaatgac 34726588  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 6489770 - 6489727
Alignment:
Q  152 tatagaacctttaaaattgtggtgttaaatttgaaaaaatgact 195  Q
    |||||||| ||||||||||||||||||||||||| |||||||||    
T  6489770 tatagaacatttaaaattgtggtgttaaatttgagaaaatgact 6489727  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 11567736 - 11567662
Alignment:
Q  127 taatctcttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgactaaattg 201  Q
    |||||||| | |||| ||||| ||| ||| ||||||||||||||||||| |||| ||| ||||| ||||||||||    
T  11567736 taatctctggttgcatcaagataagcataaaacctttaaaattgtggtgctaaacttggaaaaaggactaaattg 11567662  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 37377461 - 37377412
Alignment:
Q  147 acaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgacta 196  Q
    ||||||||| |||||||||||||||||||  |||||||| ||||||||||    
T  37377461 acaagtatataacctttaaaattgtggtgcaaaatttgagaaaatgacta 37377412  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 16873143 - 16873238
Alignment:
Q  173 gtgttaaatttgaaaaaatgactaaattgactgacatggttcagtttaagagactatattgctactttataaatttgagg-actaaattgaccaac 267  Q
    ||||||||||||  ||||||||||||||||| ||||| ||| | |||| |||||||  |||||| |||  |||||||||| |||||| ||||||||    
T  16873143 gtgttaaatttggcaaaatgactaaattgaccgacattgtttaatttacgagactaagttgctattttgcaaatttgaggtactaaactgaccaac 16873238  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 264
Target Start/End: Original strand, 20993565 - 20993722
Alignment:
Q  108 acctaaatattgacgggagtaatctcttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgactaaattgactgac 207  Q
    ||||| ||||||||  || |||||||||| |||| ||||||||  ||| ||||||| ||||||||||| |||||||| |||   |||||| |||| | |     
T  20993565 acctatatattgactagaataatctcttggtgcatcaagacaaacataaaacctttgaaattgtggtgctaaatttggaaattggactaacttgattaat 20993664  T
Q  208 atggttcagtttaagagactatattgctactttataaatttga-ggactaaattgacc 264  Q
     | ||||| |||||| |||||  ||||||  | |||||||||| | ||||||||||||    
T  20993665 gttgttcaatttaagtgactaacttgctatatcataaatttgatgaactaaattgacc 20993722  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 52928739 - 52928834
Alignment:
Q  130 tctcttgctgcaccaagacaagtatagaacctttaaaattgtggtgttaaatttg---aaaaaatgactaaattgactgacatggttcagtttaag 222  Q
    ||||||||| |  |||||||||||||||| ||| |||| | ||||| ||||||||   |||||| ||||||||||||| |||  ||||| ||||||    
T  52928739 tctcttgctacgtcaagacaagtatagaatcttaaaaactatggtgctaaatttgagaaaaaaaagactaaattgacttacaatgttcaatttaag 52928834  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 3007781 - 3007840
Alignment:
Q  147 acaagtatagaacctttaaaattgtggtgttaaatttgaaaaaatgactaaattgactga 206  Q
    ||||| |||||||||| ||||||||||||| |||||||||||   |||||||||| ||||    
T  3007781 acaagcatagaaccttcaaaattgtggtgtaaaatttgaaaagtggactaaattgtctga 3007840  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 44240723 - 44240614
Alignment:
Q  153 atagaacctt-taaaattgtggtgttaaatttgaaaaaatgactaaattgactgacatggttcagtttaagagactatattgctactttataaatttg-a 250  Q
    |||||||||| ||||||||  ||| |||||||| | ||| |||||||||||||| ||| ||||  |||||| ||||| ||||| | || |||||| || |    
T  44240723 atagaaccttctaaaattgctgtgctaaatttggagaaaagactaaattgactggcattgttctatttaagggactaaattgccatttcataaatatgaa 44240624  T
Q  251 ggactaaatt 260  Q
    ||||||||||    
T  44240623 ggactaaatt 44240614  T

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