View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8484_high_1 (Length: 516)
Name: NF8484_high_1
Description: NF8484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8484_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 16867715 - 16867217
Alignment:
| Q |
18 |
aatttagcccataataaaatgcatgcagaatacaactaattacaaagtaatgtgatcatgttataaac---------tacctgaacaaagaatctaattc |
108 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16867715 |
aatttagcccatgataaaatgcatgcagaatacaactaattgcaaagtaatgtgatcatgttataaacattataaactacctgaacaaagaatctaattc |
16867616 |
T |
|
| Q |
109 |
aagattatcagaagaaatagaaaagaatttaagtaaaaggcttacaagctttccttcatgaagattttgagcaagtatgatcttgaaaaagtgggttggt |
208 |
Q |
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||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16867615 |
aagattatcagaagaaaaagaaaagaattcaagtaaaaggcttacaagttttccttcatgaagattttgagcaagtatgatcttgaaaaagtgggttggt |
16867516 |
T |
|
| Q |
209 |
ctcacctcaggaatttcactagccatgagttgatactccctgctgtgaagtttagatgacaattatagttaaggggaatagaattaaactactgctttcg |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
16867515 |
ctcacctcaggaatttcactagccatgagttgatactccctgctgtgaagtttagatgacaattatagttaagaggaatagaattaaactactgctttcg |
16867416 |
T |
|
| Q |
309 |
tatgagactgagtatgtggaagtagttgagatttattgtttggatacccatactaccctgagttactctgttcttaaatgcgaagtatgctttaattcat |
408 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16867415 |
tatgagactgagtgtgtggaagtagttgagatttattgtttggatacccatactaccctgagttactctgttcttaaatgcgaagtatgctttaattcat |
16867316 |
T |
|
| Q |
409 |
ttttccacctgagtaaagttcaaggcttcttggaactagtatcacattaatcacaattactccacaagtgttttattgatttctttcttaattctatgat |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16867315 |
ttttccacctgagtaaagttcaaggcttcttggaactagtatcaca-taatcacaattactccacaagttttttattgatttctttcttaattctatgat |
16867217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 27 - 235
Target Start/End: Complemental strand, 16872466 - 16872249
Alignment:
| Q |
27 |
cataataaaatgcatgcagaatacaactaattacaaagtaatgtgatca--tg-------ttataaactacctgaacaaagaatctaattcaagattatc |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||| |
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| T |
16872466 |
cataataaaatgcatgcaaaatacaactaattacaaagtaatgtgatcaactgataaacattataaactacctgaacaaagaatctaactcaagattatc |
16872367 |
T |
|
| Q |
118 |
agaagaaatagaaaagaatttaagtaaaaggcttacaagctttccttcatgaagattttgagcaagtatgatcttgaaaaagtgggttggtctcacctca |
217 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
16872366 |
agaagaaaaagaaaagaatttaagtaaaaggcttacaagctttccttcatgaagattttgagcaagtattatcttgaaaaagtgggttgatctcacctca |
16872267 |
T |
|
| Q |
218 |
ggaatttcactagccatg |
235 |
Q |
| |
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|||||||||||| ||||| |
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| T |
16872266 |
ggaatttcactacccatg |
16872249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 353 - 496
Target Start/End: Complemental strand, 16872256 - 16872114
Alignment:
| Q |
353 |
tacccatactaccctgagttactctgttcttaaatgcgaagtatgctttaattcatttttccacctgagtaaagttcaaggcttcttggaactagtatca |
452 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
16872256 |
tacccatgctaccctgagttactctgttcttaaatgcgtagtatgctttaattcatttttccacctgactaaagttcaaggcttcttggaactagtaaca |
16872157 |
T |
|
| Q |
453 |
cattaatcacaattactccacaagtgttttattgatttctttct |
496 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16872156 |
ca-taatcacaattactccacaagtgttttattgatttctttct |
16872114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 79 - 296
Target Start/End: Complemental strand, 16862255 - 16862038
Alignment:
| Q |
79 |
tataaactacctgaacaaagaatctaattcaagattatcagaagaaatagaaaagaatttaagtaaaaggcttacaagctttccttcatgaagattttga |
178 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||||||||| | || ||||| ||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
16862255 |
tataaactaactgaacaaagaatctaactcgagattatcagaagaaaaataatagaatctaagtcaaaggcttacaagctttccttcctgaagattttga |
16862156 |
T |
|
| Q |
179 |
gcaagtatgatcttgaaaaagtgggttggtctcacctcaggaatttcactagccatgagttgatactccctgctgtgaagtttagatgacaattatagtt |
278 |
Q |
| |
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|||||||| ||||||||||||||| |||| ||| |||| || ||||||||||||||||| |||| | |||| | |||||||||||||||||| |||| |
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| T |
16862155 |
gcaagtattatcttgaaaaagtggattggcttcaactcaagagtttcactagccatgagtgagtactgcttgctattaagtttagatgacaattacagtt |
16862056 |
T |
|
| Q |
279 |
aaggggaatagaattaaa |
296 |
Q |
| |
|
|||| | ||||||||||| |
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|
| T |
16862055 |
aaggaggatagaattaaa |
16862038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 17605115 - 17605023
Alignment:
| Q |
144 |
aaaggcttacaagctttccttcatgaagattttgagcaagtatgatcttgaaaaagtgggttggtctcacctcaggaatttcactagccatga |
236 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| |
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| T |
17605115 |
aaaggcttacaaggtttccttggagaaggttttgagcaagtatgatcttgaaaaattggattggcttcacctcagcaatttcactagccatga |
17605023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 446
Target Start/End: Complemental strand, 16861889 - 16861842
Alignment:
| Q |
399 |
tttaattcatttttccacctgagtaaagttcaaggcttcttggaacta |
446 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||| |||||| |
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| T |
16861889 |
tttaattcatttttccacctcaccaaagttcaaggcttcttagaacta |
16861842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 16888809 - 16888737
Alignment:
| Q |
130 |
aaagaatttaagtaaaaggcttacaagctttccttcatgaagattttgagcaagtatgatcttgaaaaagtgg |
202 |
Q |
| |
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||||||||||||| ||| ||||||||| |||||| || |||| ||||| | ||||||||||||||||||| |
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| T |
16888809 |
aaagaatttaagtcaaaagcttacaagttttcctacaagaaggctttgaatagttatgatcttgaaaaagtgg |
16888737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 45269285 - 45269231
Alignment:
| Q |
147 |
ggcttacaagctttccttcatgaagattttgagcaagtatgatcttgaaaaagtg |
201 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||| ||||||||||||||| ||||| |
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|
| T |
45269285 |
ggcttacaagctttccatgatgaaggttttgagtaagtatgatcttgaagaagtg |
45269231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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