View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8484_low_2 (Length: 479)
Name: NF8484_low_2
Description: NF8484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8484_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 66 - 461
Target Start/End: Complemental strand, 37002113 - 37001718
Alignment:
| Q |
66 |
gggaaatttttgcagtttcgataaattgatggattagagcaacatcgtcttataaattcatgtagtagaatagtttattgttatcaaattatgacacctc |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37002113 |
gggaaatttttgcagtttcgataaattgatggattagagcaacatcgtcttatacattcatgtagtagaatagtttattgttatcaaattatgacaccgc |
37002014 |
T |
|
| Q |
166 |
tgagttagaaacttgataattaagaaacaaaattgacaaaatgaaatttcatgatcagaagaaatctaagaaagtaggtagtgtcatagtggtaccttag |
265 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37002013 |
tgagttagaaagttcataattaagaaacaaaattgacaaaatgaaatttcatgatcagaagaaatctaagaaagtaggtagtgtcatagtggtaccttag |
37001914 |
T |
|
| Q |
266 |
catgttgaggttcagaaacatcttgataaacaccaaccctaatatttcccgtaaattcaacactaggaacaaaatctccaaccaaaacatcttttttgtc |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37001913 |
catgttgaggttcagaaacatcttgataaacaccaaccctgatatttcccgtaaattcaacactaggaacaaaatctccaaccaaaacatcttttttgtc |
37001814 |
T |
|
| Q |
366 |
aacaaggtccatatcaaagagatgggagaaagacttacaatcaagaactgcaatgatgttaggattaacgttggtgaagaaagggaacgtgggtgg |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37001813 |
aacaaggtccatatcaaagagatgggagaaagacttacaatcaagaactgcaatgatgttaggattaacgttggtgaagaaagggaacgtgggtgg |
37001718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University