View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8484_low_3 (Length: 347)

Name: NF8484_low_3
Description: NF8484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8484_low_3
NF8484_low_3
[»] chr6 (3 HSPs)
chr6 (5-240)||(35091745-35091980)
chr6 (238-285)||(35092889-35092936)
chr6 (5-112)||(19228492-19228599)
[»] chr2 (4 HSPs)
chr2 (130-241)||(9259579-9259689)
chr2 (132-238)||(17139937-17140043)
chr2 (138-220)||(31392295-31392377)
chr2 (13-112)||(39809469-39809568)
[»] chr3 (4 HSPs)
chr3 (130-238)||(1580996-1581105)
chr3 (130-238)||(41404207-41404316)
chr3 (130-175)||(3663805-3663850)
chr3 (8-112)||(41403985-41404089)
[»] chr1 (3 HSPs)
chr1 (130-220)||(3290493-3290583)
chr1 (138-238)||(32984385-32984486)
chr1 (8-112)||(32984613-32984717)
[»] chr7 (6 HSPs)
chr7 (130-238)||(30464521-30464630)
chr7 (144-238)||(8160939-8161032)
chr7 (130-238)||(39827621-39827730)
chr7 (5-112)||(30464295-30464402)
chr7 (6-112)||(39827396-39827502)
chr7 (5-110)||(8160705-8160810)
[»] chr8 (1 HSPs)
chr8 (130-176)||(12735469-12735515)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 35091745 - 35091980
Alignment:
Q  5 gagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcataca 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  35091745 gagaaaagagaaaactaaacatagatgattttaggagttgttatctcgataacatcagctaacaccaaagaattaagcctaattggacactactcataca 35091844  T
Q  105 catgcaactcagtgannnnnnngattgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgca 204  Q
    || ||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  35091845 cacgcaactcagtgatttttttgattgagacgtcaaccaacaacacttccatccttagttgtgtgcagggtacacaccaccacactcgaatcgacgtgca 35091944  T
Q  205 actcaaccttcgcaaacccctctctctagcaattcg 240  Q
    ||||||||||||||||||||||||||||||||||||    
T  35091945 actcaaccttcgcaaacccctctctctagcaattcg 35091980  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 35092889 - 35092936
Alignment:
Q  238 tcggtcactttatgatattattgggtagcgaaaaaccattgagaacgc 285  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  35092889 tcggtcactttatgatattattgggtagcgaaaaaccattgaaaacgc 35092936  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 19228599 - 19228492
Alignment:
Q  5 gagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcataca 104  Q
    |||||||||||||| |||||| |||||| | |||||||  ||||  | |||||||||| |||||||| |||  |||| ||| ||||||| | ||||||||    
T  19228599 gagaaaagagaaaattaaacagagatgaatctaggggtcattattcccataacatcagctaacaccagagaactaagcctagttggacattgctcataca 19228500  T
Q  105 catgcaac 112  Q
    || |||||    
T  19228499 cacgcaac 19228492  T

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Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 9259579 - 9259689
Alignment:
Q  130 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcaaccttcgcaaacccctctct 229  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| || | |||||||||||||||||| || || |||||||||||||||||  |||||||    
T  9259579 tgagacgccaaccaacaacacttccatccttagttgtctacagagtcctcaccaccacactcgaatcaacgtgtaactcaaccttcgcaaa-acctctct 9259677  T
Q  230 ctagcaattcgg 241  Q
    ||||||||||||    
T  9259678 ctagcaattcgg 9259689  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 17139937 - 17140043
Alignment:
Q  132 agacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcaaccttcg-caaacccctctctc 230  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| || || |||||||||||||  ||||| |||||||    
T  17139937 agacgccaaccaa-aacacttccatccttagttgtctgcagagtccacaccaccacactcgaatcaacatgtaactcaaccttcgaaaaacctctctctc 17140035  T
Q  231 tagcaatt 238  Q
    ||||||||    
T  17140036 tagcaatt 17140043  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 220
Target Start/End: Complemental strand, 31392377 - 31392295
Alignment:
Q  138 caaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcaaccttcgcaaa 220  Q
    |||||||||| |||||||||||||||| |||||||||| | |||||| ||||| |||||  | |||||||||||||| |||||    
T  31392377 caaccaacaatacttccatccttagttatctgcagggtccgcaccactacacttgaatcagcgtgcaactcaacctttgcaaa 31392295  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 39809568 - 39809469
Alignment:
Q  13 agaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcatacacatgcaac 112  Q
    ||||||||||||| |||||| | ||||||| | |||| | ||||||| ||||||||||  | |  |||| |||| | ||||||||||||||||| |||||    
T  39809568 agaaaactaaacagagatgactctaggggtcgctatccccataacattagttaacaccggataactaagcctaactagacactactcatacacacgcaac 39809469  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 1581105 - 1580996
Alignment:
Q  130 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcaaccttcgc-aaacccctctc 228  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||| || |||||||||||||| || ||||| |||||    
T  1581105 tgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgcaccaccacacttgaatcaacgtgcaactcaacctttgcaaaacctctctc 1581006  T
Q  229 tctagcaatt 238  Q
    ||||||||||    
T  1581005 tctagcaatt 1580996  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 41404207 - 41404316
Alignment:
Q  130 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcaaccttcgc-aaacccctctc 228  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||  ||||||||||||| |||| || ||||||||||||||||| ||||| |||||    
T  41404207 tgagacgccaaccaacaacacttccatcctaagttgtttgcagggtatgcaccaccacactcaaatcaacatgcaactcaaccttcgcaaaacctctctc 41404306  T
Q  229 tctagcaatt 238  Q
    |||| |||||    
T  41404307 tctaacaatt 41404316  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 3663805 - 3663850
Alignment:
Q  130 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggt 175  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||||    
T  3663805 tgagacgccaaccaacaacacttccatctttagttgtttgcagggt 3663850  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 41403985 - 41404089
Alignment:
Q  8 aaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcatacacat 107  Q
    |||||||||||||| ||| ||| || | |||| || | ||||   ||||||| || |||||||| |||  ||||||||  ||||||||| ||||||||||    
T  41403985 aaaagagaaaactagacagagacgactctaggagtcgctatccacataacataagctaacaccagagaactaagtctagctggacactagtcatacacat 41404084  T
Q  108 gcaac 112  Q
    |||||    
T  41404085 gcaac 41404089  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 3290583 - 3290493
Alignment:
Q  130 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcaaccttcgcaaa 220  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||    
T  3290583 tgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaa 3290493  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 32984486 - 32984385
Alignment:
Q  138 caaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcaaccttcgc-aaacccctctctctagcaa 236  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| || |||||||||||||| || ||||| |||| ||||||||    
T  32984486 caaccaacaacacttccatccttagttgtctgcagggtatgcaccaccacacttgaatcaacgtgcaactcaacctttgcaaaacctctctgtctagcaa 32984387  T
Q  237 tt 238  Q
    ||    
T  32984386 tt 32984385  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 32984717 - 32984613
Alignment:
Q  8 aaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcatacacat 107  Q
    ||||||||||| |||||| |||||| | ||||||||| |||| | |||||||||  |||||||| |||  |||| |||  |||||| | ||||||||||     
T  32984717 aaaagagaaaattaaacagagatgactctaggggttgctatccccataacatcaactaacaccagagaactaagcctagctggacattgctcatacacac 32984618  T
Q  108 gcaac 112  Q
    |||||    
T  32984617 gcaac 32984613  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 30464521 - 30464630
Alignment:
Q  130 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcaaccttcgc-aaacccctctc 228  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||  || ||||||||||| || || ||||| |||||    
T  30464521 tgagacgccaaccaacaacacttccattcttagttgtctgcagggtatgcaccaccacacttgaattaacgtgcaactcaacttttgcaaaacctctctc 30464620  T
Q  229 tctagcaatt 238  Q
    ||||||||||    
T  30464621 tctagcaatt 30464630  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 8160939 - 8161032
Alignment:
Q  144 acaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcaaccttcgcaaacccctctctctagcaatt 238  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||| ||||| |||||||||||||| || |||||  ||||||||||| ||||    
T  8160939 acaacacttctatccttagttgtctgcagggtatgcaccaccacacttgaatcaacttgcaactcaacttttgcaaa-acctctctctagaaatt 8161032  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 39827621 - 39827730
Alignment:
Q  130 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcaaccttcgc-aaacccctctc 228  Q
    ||||||| |||||| |||||| ||||||||||||||| |||| | ||  |||||||||||||||||| || || |||||||| || || ||||| |||||    
T  39827621 tgagacgccaaccagcaacacctccatccttagttgtttgcaagctatgcaccaccacactcgaatcaacgtgaaactcaacttttgctaaacctctctc 39827720  T
Q  229 tctagcaatt 238  Q
    ||||||||||    
T  39827721 tctagcaatt 39827730  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 30464295 - 30464402
Alignment:
Q  5 gagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcataca 104  Q
    ||||||||||||||  ||||| |||||| ||||||||| | |||| | |||||||||| |||||||| |||  |||| |||  |||||||||||||||||    
T  30464295 gagaaaagagaaaatcaaacaaagatgactttaggggtcgctatccccataacatcagctaacaccagagaaataagcctagctggacactactcataca 30464394  T
Q  105 catgcaac 112  Q
    || |||||    
T  30464395 cacgcaac 30464402  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 39827396 - 39827502
Alignment:
Q  6 agaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcatacac 105  Q
    |||||| ||||||||||||| |||||| | ||||||| | |||| | |||||||||  ||||| || | |  |||||||| || |||||| |||||||||    
T  39827396 agaaaaaagaaaactaaacagagatgactctaggggtcgctatccctataacatcaactaacatcagataactaagtctagtttgacactgctcatacac 39827495  T
Q  106 atgcaac 112  Q
    | |||||    
T  39827496 acgcaac 39827502  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 8160705 - 8160810
Alignment:
Q  5 gagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcataca 104  Q
    ||||||||||||||||||| | |||||| | |||||||   |||| | |||||||||| |||||||| |||  ||||  ||  |||||||| |||| |||    
T  8160705 gagaaaagagaaaactaaatagagatgactctaggggtcactatccccataacatcagctaacaccagagaactaagcttagctggacactgctcagaca 8160804  T
Q  105 catgca 110  Q
    ||||||    
T  8160805 catgca 8160810  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 12735469 - 12735515
Alignment:
Q  130 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggta 176  Q
    ||||||||||||||||||||||| |||| |||||||| || ||||||    
T  12735469 tgagacgtcaaccaacaacactttcatctttagttgtttgtagggta 12735515  T

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