View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8484_low_5 (Length: 251)

Name: NF8484_low_5
Description: NF8484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8484_low_5
NF8484_low_5
[»] chr7 (2 HSPs)
chr7 (5-79)||(31667215-31667289)
chr7 (142-202)||(31667296-31667356)
[»] chr6 (2 HSPs)
chr6 (13-79)||(14451607-14451673)
chr6 (147-202)||(14451688-14451743)
[»] chr4 (3 HSPs)
chr4 (178-242)||(52739914-52739978)
chr4 (16-71)||(44396458-44396513)
chr4 (4-134)||(52739791-52739911)
[»] chr2 (1 HSPs)
chr2 (22-121)||(45393265-45393364)
[»] scaffold0340 (1 HSPs)
scaffold0340 (94-125)||(5735-5766)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 31667215 - 31667289
Alignment:
Q  5 tgtcccttctgataagtgcaggatcaagcttctgcacataattatttgcgaaaacaatcaacctttcccatccaa 79  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||    
T  31667215 tgtcccttctgataagtgcaggatcaagcttctacacattattatttgcgaaaacaatcaaccttttccatccaa 31667289  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 31667296 - 31667356
Alignment:
Q  142 agtgacagaactgaacaagtttataatcagtattagtgaaaaatcacggttatcatagagg 202  Q
    |||| ||||||| ||||||||||||||||  |||||||||||||||| |||| ||||||||    
T  31667296 agtgccagaactaaacaagtttataatcaaaattagtgaaaaatcactgttaacatagagg 31667356  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 14451607 - 14451673
Alignment:
Q  13 ctgataagtgcaggatcaagcttctgcacataattatttgcgaaaacaatcaacctttcccatccaa 79  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  14451607 ctgataagtgcaggatcaagcttctacacattattatttgcgaaaacaatcaacctttcccatccaa 14451673  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 14451688 - 14451743
Alignment:
Q  147 cagaactgaacaagtttataatcagtattagtgaaaaatcacggttatcatagagg 202  Q
    ||||||| ||||||||||||||||  |||||||||||||||| |||| ||||||||    
T  14451688 cagaactaaacaagtttataatcaaaattagtgaaaaatcactgttaccatagagg 14451743  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 52739914 - 52739978
Alignment:
Q  178 tgaaaaatcacggttatcatagaggttctattattctaatctaattaagaaactgatgaacacca 242  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||    
T  52739914 tgaaaaataacggttatcatagaggttctattgttctaatctaattaagaaactaataaacacca 52739978  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 44396513 - 44396458
Alignment:
Q  16 ataagtgcaggatcaagcttctgcacataattatttgcgaaaacaatcaacctttc 71  Q
    |||||||||||||||||||||| |||||||||  ||| ||||||||| ||||||||    
T  44396513 ataagtgcaggatcaagcttctccacataatttgttgtgaaaacaattaacctttc 44396458  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 52739791 - 52739911
Alignment:
Q  4 ttgtcccttctgataagtgcaggatcaagcttctgcacataattatttgcgaaaacaatcaacctttcccatccaaatgcaaaccatgaaattaaattac 103  Q
    |||||||||||||||||| ||| |||||||||||||||| ||||| |           ||||||||||||| ||||||||| || |||||||| ||| ||    
T  52739791 ttgtcccttctgataagtacagaatcaagcttctgcacaaaattagt-----------tcaacctttcccacccaaatgcagactatgaaattcaataac 52739879  T
Q  104 catctatt-aacaaatataaaggactcctatg 134  Q
    ||| | || |||||||||||| || |||||||    
T  52739880 catatgttaaacaaatataaatgattcctatg 52739911  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 45393265 - 45393364
Alignment:
Q  22 gcaggatcaagcttctgcacataattatttgcgaaaacaatcaacctttcccatccaaatgcaaaccatgaaattaaattaccatctattaacaaatata 121  Q
    |||||||||||| |||||||||| ||  | | |||||| ||||| |||||||||||||||||| || ||||||    |||||||||||||||||||||||    
T  45393265 gcaggatcaagcatctgcacatagttggtggtgaaaactatcaatctttcccatccaaatgcagactatgaaacctgattaccatctattaacaaatata 45393364  T

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Target: scaffold0340 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 125
Target Start/End: Complemental strand, 5766 - 5735
Alignment:
Q  94 attaaattaccatctattaacaaatataaagg 125  Q
    ||||||||||||||||||||||||||||||||    
T  5766 attaaattaccatctattaacaaatataaagg 5735  T

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