View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8484_low_6 (Length: 240)
Name: NF8484_low_6
Description: NF8484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8484_low_6 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0340 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 31667153 - 31667227
Alignment:
| Q |
166 |
aaacaagagttacttattagtagcaagcactttaaaactacaccaggaaagttcaatatgcttgtcccttctgat |
240 |
Q |
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| T |
31667153 |
aaacaggagttacttattagcggcaagcactttaaaactacaccaggaaagttcaatatgcctgtcccttctgat |
31667227 |
T |
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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 52739743 - 52739804
Alignment:
| Q |
179 |
ttattagtagcaagcactttaaaactacaccaggaaagttcaatatgcttgtcccttctgat |
240 |
Q |
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| T |
52739743 |
ttattagcagcaaacactttaaaactacaacaggaaagttcaatatgtttgtcccttctgat |
52739804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 233
Target Start/End: Original strand, 45393195 - 45393249
Alignment:
| Q |
179 |
ttattagtagcaagcactttaaaactacaccaggaaagttcaatatgcttgtccc |
233 |
Q |
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| T |
45393195 |
ttattagtagcaagcactttaacgctacaataggaaagttcaatatgctagtccc |
45393249 |
T |
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Target: scaffold0340 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 5854 - 5815
Alignment:
| Q |
183 |
tagtagcaagcactttaaaactacaccaggaaagttcaat |
222 |
Q |
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| T |
5854 |
tagtggcaagcactttaaaagtacaccaggaaagttcaat |
5815 |
T |
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