View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8485_high_3 (Length: 419)

Name: NF8485_high_3
Description: NF8485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8485_high_3
NF8485_high_3
[»] chr6 (2 HSPs)
chr6 (18-395)||(34241314-34241692)
chr6 (42-191)||(11768602-11768752)
[»] chr3 (4 HSPs)
chr3 (42-329)||(43389191-43389476)
chr3 (42-85)||(35442571-35442615)
chr3 (43-84)||(34134116-34134158)
chr3 (43-82)||(49086190-49086230)
[»] chr8 (5 HSPs)
chr8 (90-329)||(41706669-41706905)
chr8 (42-118)||(41709562-41709640)
chr8 (42-190)||(41707328-41707478)
chr8 (43-84)||(9875370-9875412)
chr8 (43-91)||(41708415-41708464)
[»] chr1 (6 HSPs)
chr1 (98-184)||(41883031-41883117)
chr1 (42-91)||(10459766-10459816)
chr1 (43-91)||(27969900-27969949)
chr1 (43-92)||(8673661-8673711)
chr1 (47-91)||(8674690-8674735)
chr1 (109-189)||(23373559-23373640)
[»] chr4 (4 HSPs)
chr4 (68-184)||(17083942-17084059)
chr4 (67-116)||(17087735-17087784)
chr4 (67-116)||(17095710-17095759)
chr4 (42-91)||(47925546-47925596)
[»] chr7 (3 HSPs)
chr7 (43-91)||(21460130-21460179)
chr7 (44-91)||(19795275-19795323)
chr7 (42-85)||(45721526-45721570)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 34241314 - 34241692
Alignment:
Q  18 agtaacaacacagagacaccaatgaggtggcatttaggatgcacaaatttaaatttgtgcaccatacataagttataaatagttatttttgaccattaga 117  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  34241314 agtaacaacacatagactccaatgaggtggcatttaggatgcacaaatttaaatttgtgcactatacataaattataaatagttatttttgaccattaga 34241413  T
Q  118 ttaaagaaaa-acattgatcttattatggtaaacctacactatatctttctcactttgtcttcaaccttcctaccatctctcttttcatcaccacccacc 216  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34241414 ttaaagaaaaaacattgatcttattatggtaaacctacactatatctttctcactttgtcttcaaccttcctaccatctctcttttcatcaccacccact 34241513  T
Q  217 accacatgcaaactcaacaacttcctccgtcggtgtcgcaaccattatcaaactctgaccatttgtttccagccagagatccacttgccagcgatggatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  ||| ||||||||| ||||||||||    
T  34241514 accacatgcaaactcaacaacttcctccgtcggtgtcgcaaccgttatcgaactctgaccatttgtttccagccgaagacccacttgccggcgatggatt 34241613  T
Q  317 tgagtggatcgaacgaatctagatgtcgtccataaatcaccaccactttcaccaacatcatattgccacaccaccacca 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241614 tgagtggatcgaacgaatctagatgtcgtccataaatcaccaccactttcaccaacatcatattgccacaccaccacca 34241692  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 11768602 - 11768752
Alignment:
Q  42 aggtggcatttaggatgcacaaatt--taaatttgtgcaccatacataagttataaatagttatttttgaccattagattaaagaaaaacattgatctta 139  Q
    |||||||||||||| ||||||||||  |||||||||||||||| || |||||| | | | ||| ||||  ||| ||||||||||| |||||||||| |||    
T  11768602 aggtggcatttagggtgcacaaattgttaaatttgtgcaccatgcacaagttagagaaaattacttttagccactagattaaagagaaacattgatttta 11768701  T
Q  140 ttatggtaaacctacactatatctttctcactttgtcttcaaccttcctacc 191  Q
    |||| ||  | |||||| |||  ||||||||||   ||||||||||||||||    
T  11768702 ttatagttcaactacaccata-atttctcacttaaccttcaaccttcctacc 11768752  T

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Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 42 - 329
Target Start/End: Original strand, 43389191 - 43389476
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagttataaatagttatttttgaccattagattaaagaaaaacattgatcttat 140  Q
    |||||||||||||| |||| || | |||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||| ||||||  |||||||    
T  43389191 aggtggcatttagggtgcaaaattgttaaatttgtgcaccatatacaaattataaatagttatttttgaccagtagattaaagagaaacatcaatcttat 43389290  T
Q  141 tatggtaaacctacactatatctttctcactttgtcttcaaccttcctaccatctctcttttcatcaccacccaccaccacatgcaaactcaacaacttc 240  Q
     ||||| | ||||||||||||| |||||  ||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||    
T  43389291 catggtcagcctacactatatcgttctcg-tttgtcttcaaccttcctaccatctc--ttttcatcaccacccaccaccacaagcaaactcaacagcttc 43389387  T
Q  241 ctccgtcggtgtcgcaaccattatcaaactctgaccatttgtttccagccagagatccacttgccagcgatggatttgagtggatcgaa 329  Q
    ||| | || ||  |||||| ||||| || |||||||||||||||||||||| |||||||||| ||  |||| |||||||||||||||||    
T  43389388 ctctgccgatggagcaaccgttatcgaaatctgaccatttgtttccagccaaagatccacttaccgacgatagatttgagtggatcgaa 43389476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 35442615 - 35442571
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccataca 85  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  35442615 aggtggcatttaggatgcacaaataataaatttgtgcaccataca 35442571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 34134158 - 34134116
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatac 84  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  34134158 ggtggcatttagcatgcacaaatgttaaatttgtgcaccatac 34134116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 49086230 - 49086190
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccat 82  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  49086230 ggtggcatttaggatgcacaaatgtaaaatttgtgcaccat 49086190  T

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Target: chr8 (Bit Score: 141; Significance: 8e-74; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 90 - 329
Target Start/End: Original strand, 41706669 - 41706905
Alignment:
Q  90 ttataaatagttatttttgaccattagattaaagaaaaacattgatcttattatggtaaacctacactatatctttctcactttgtcttcaaccttccta 189  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||   |||||||||||||||||||    
T  41706669 ttataaatagttatttttgaccattagattaaagagaaacattgatcttattatggtcagcctacactatatcgttcttg-tttgtcttcaaccttccta 41706767  T
Q  190 ccatctctcttttcatcaccacccaccaccacatgcaaactcaacaacttcctccgtcggtgtcgcaaccattatcaaactctgaccatttgtttccagc 289  Q
     ||||||  |||||||||||||||||||||||| |||||||||||| ||||||| | || ||  |||||| ||||| || ||||||||||||||||||||    
T  41706768 acatctc--ttttcatcaccacccaccaccacaagcaaactcaacagcttcctctgacgatggagcaaccgttatcgaaatctgaccatttgtttccagc 41706865  T
Q  290 cagagatccacttgccagcgatggatttgagtggatcgaa 329  Q
    |  |||||||||||||| ||||||||||||||||||||||    
T  41706866 cgaagatccacttgccaacgatggatttgagtggatcgaa 41706905  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 41709640 - 41709562
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagttataa-atagttatttttgaccattagat 118  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||| | | ||||||||| |||||||||    
T  41709640 aggtggcatttagggtgcacaaatgttaaatttgtgcaccatacacaagttttaataaaattatttttggccattagat 41709562  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 41707478 - 41707328
Alignment:
Q  42 aggtggcatttaggatgcacaaatt--taaatttgtgcaccatacataagttataaatagttatttttgaccattagattaaagaaaaacattgatctta 139  Q
    |||||||||||||| | |||||| |  ||||||||||||||||||| |||||| | | | |||||||| |||||| |||| ||||  |||||| ||||||    
T  41707478 aggtggcatttagggttcacaaactattaaatttgtgcaccatacacaagttagagaaaattatttttaaccatttgatttaagaggaacattaatctta 41707379  T
Q  140 ttatggtaaacctacactatatctttctcactttgtcttcaaccttcctac 190  Q
    | || ||     ||||| |||| ||  |||||||||||||||| |||||||    
T  41707378 taatagtctgtgtacaccatatattcttcactttgtcttcaactttcctac 41707328  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 9875412 - 9875370
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatac 84  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  9875412 ggtggcatttagcatgcacaaatgttaaatttgtgcaccatac 9875370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 41708415 - 41708464
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    |||||||||||| |||||||||| ||||||||||||||||| || |||||    
T  41708415 ggtggcatttagaatgcacaaatattaaatttgtgcaccatgcacaagtt 41708464  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 41883031 - 41883117
Alignment:
Q  98 agttatttttgaccattagattaaagaaaaacattgatcttattatggtaaacctacactatatctttctcactttgtcttcaacct 184  Q
    ||||||||||   |||||||||||||| ||||||| || ||||||| ||  | | ||||||||||||||||||||||||||||||||    
T  41883031 agttatttttagtcattagattaaagagaaacatttattttattatagtctatccacactatatctttctcactttgtcttcaacct 41883117  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 10459766 - 10459816
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  10459766 aggtggcatttaggatgcacaaatgttaaatttgtgcaccatacacaagtt 10459816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 27969949 - 27969900
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    |||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  27969949 ggtggcatttaggatgcacaaatactaaatttgtgcaccatacacaagtt 27969900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 8673661 - 8673711
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtta 92  Q
    ||||||||||||| ||||||||  |||||||||||||||||||| ||||||    
T  8673661 ggtggcatttagggtgcacaaacattaaatttgtgcaccatacacaagtta 8673711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 8674735 - 8674690
Alignment:
Q  47 gcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||||    
T  8674735 gcatttaggatgcacaaatgttagatttgtgcaccatacacaagtt 8674690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 23373559 - 23373640
Alignment:
Q  109 accattagattaaagaaaaacattgatc-ttattatggtaaacctacactatatctttctcactttgtcttcaaccttccta 189  Q
    ||||||| || |||||  |||||||||| ||||||| ||   || ||||||||||| |||||||||||||||||||| ||||    
T  23373559 accattatataaaagaggaacattgatccttattatagtctgcccacactatatctctctcactttgtcttcaacctcccta 23373640  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 17084059 - 17083942
Alignment:
Q  68 aaatttgtgcaccatacataagttata-aatagttatttttgaccattagattaaagaaaaacattgatcttattatggtaaacctacactatatctttc 166  Q
    |||||| ||||||||| | |||||||| || |||||||||| |||||||||||||| |  |||||| |||||||||| ||    ||| ||||||| | ||    
T  17084059 aaatttatgcaccatatacaagttatagaaaagttatttttaaccattagattaaaaaggaacattaatcttattatagtttgtctatactatatatctc 17083960  T
Q  167 tcactttgtcttcaacct 184  Q
    ||||||| ||||||||||    
T  17083959 tcactttttcttcaacct 17083942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 17087784 - 17087735
Alignment:
Q  67 taaatttgtgcaccatacataagttataaatagttatttttgaccattag 116  Q
    ||||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  17087784 taaatttatgcaccatacataagttataaaaagttatttttaaacattag 17087735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 17095759 - 17095710
Alignment:
Q  67 taaatttgtgcaccatacataagttataaatagttatttttgaccattag 116  Q
    ||||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  17095759 taaatttatgcaccatacataagttataaaaagttatttttaaacattag 17095710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 47925546 - 47925596
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    |||||||||||| | ||||||||| |||||||||||||||||||| |||||    
T  47925546 aggtggcatttaaggtgcacaaatgttaaatttgtgcaccatacacaagtt 47925596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 21460130 - 21460179
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    ||||||||||||||||||||||| ||||||||||| ||||| || |||||    
T  21460130 ggtggcatttaggatgcacaaatgttaaatttgtgtaccatgcacaagtt 21460179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 19795323 - 19795275
Alignment:
Q  44 gtggcatttaggatgcacaaatt-taaatttgtgcaccatacataagtt 91  Q
    ||||||||||| |||||||| |  |||||||||||||||||||||||||    
T  19795323 gtggcatttagcatgcacaattgataaatttgtgcaccatacataagtt 19795275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 45721570 - 45721526
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccataca 85  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  45721570 aggtggcgtttaggatgcacaaataataaatttgtgcaccataca 45721526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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