View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8485_low_2 (Length: 557)
Name: NF8485_low_2
Description: NF8485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8485_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 6 - 541
Target Start/End: Original strand, 45342448 - 45342983
Alignment:
| Q |
6 |
agaagcagagatgctgctcatgtcctttgttgatgctaccaattcaaaacaagaagatacatggttcctcgactccggttgtagcaatcacatgtgcgga |
105 |
Q |
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| T |
45342448 |
agaagaagagatgctgctcatgtcctttgttgaagctaccaattcaaaacaagaagatatatggtttctcgactccggttgtagcaatcacatgtgcgga |
45342547 |
T |
|
| Q |
106 |
aacaagcagtggttttctaccattgatgaagatttcaaacactcggtaaagctcggcaacgattccaaaatggcggtaatgggaaaagggaacattcgac |
205 |
Q |
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| T |
45342548 |
aacaagcagtggttttctaccattaatgaagatttcaaacactcggtaaagctcggcaacgattccaaaatggtggtaatgggaaaagggaacatttgac |
45342647 |
T |
|
| Q |
206 |
ttgagatcaatggtgcaattcaagtagtcactgatgtctactatgttccagagttgaaaaataacttactgagtgtaggccagcttcaagaaaaaggatt |
305 |
Q |
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| T |
45342648 |
ttgagatcaatggtgcaattcaagtagtcactgatgtctactatgttccaaagttgaaaaataacttactgaatgtaggccaacttcaagaaaaaggatt |
45342747 |
T |
|
| Q |
306 |
aactttacttatacaaaatggaacatgcaagttattccatccaagaagaggattgctcatgcaaacaaaaatgacggcaaatcgaatgtttgtgctgctg |
405 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45342748 |
aactttacttatacaaaatgaaacatgcaagttattccatcaaagaagaggattgttcatgcaaacaaaaatgacagcaaatcgaatgtttgtgctgctg |
45342847 |
T |
|
| Q |
406 |
gctagtgtggtacttcaagagacctcaacgttcctacaattagctactgaagatagctcacaattgtggcatcgtagatttgggcacttgagttacaaag |
505 |
Q |
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| T |
45342848 |
gctagtgtggtgcttcaagagacctcaacattcctacaattagctactgaagatagcttacaattgtggcatcgtagatttgggcacttgagttacaaag |
45342947 |
T |
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| Q |
506 |
gtttgaggactttgcaatataaacagatggtgaagg |
541 |
Q |
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| T |
45342948 |
gtttgaggactttgcaatataaacagatggtaaagg |
45342983 |
T |
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