View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8485_low_4 (Length: 419)

Name: NF8485_low_4
Description: NF8485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8485_low_4
NF8485_low_4
[»] chr6 (2 HSPs)
chr6 (18-395)||(34241314-34241692)
chr6 (42-191)||(11768602-11768752)
[»] chr3 (4 HSPs)
chr3 (42-329)||(43389191-43389476)
chr3 (42-85)||(35442571-35442615)
chr3 (43-84)||(34134116-34134158)
chr3 (43-82)||(49086190-49086230)
[»] chr8 (5 HSPs)
chr8 (90-329)||(41706669-41706905)
chr8 (42-118)||(41709562-41709640)
chr8 (42-190)||(41707328-41707478)
chr8 (43-84)||(9875370-9875412)
chr8 (43-91)||(41708415-41708464)
[»] chr1 (6 HSPs)
chr1 (98-184)||(41883031-41883117)
chr1 (42-91)||(10459766-10459816)
chr1 (43-91)||(27969900-27969949)
chr1 (43-92)||(8673661-8673711)
chr1 (47-91)||(8674690-8674735)
chr1 (109-189)||(23373559-23373640)
[»] chr4 (4 HSPs)
chr4 (68-184)||(17083942-17084059)
chr4 (67-116)||(17087735-17087784)
chr4 (67-116)||(17095710-17095759)
chr4 (42-91)||(47925546-47925596)
[»] chr7 (3 HSPs)
chr7 (43-91)||(21460130-21460179)
chr7 (44-91)||(19795275-19795323)
chr7 (42-85)||(45721526-45721570)


Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 34241314 - 34241692
Alignment:
Q  18 agtaacaacacagagacaccaatgaggtggcatttaggatgcacaaatttaaatttgtgcaccatacataagttataaatagttatttttgaccattaga 117  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  34241314 agtaacaacacatagactccaatgaggtggcatttaggatgcacaaatttaaatttgtgcactatacataaattataaatagttatttttgaccattaga 34241413  T
Q  118 ttaaagaaaa-acattgatcttattatggtaaacctacactatatctttctcactttgtcttcaaccttcctaccatctctcttttcatcaccacccacc 216  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34241414 ttaaagaaaaaacattgatcttattatggtaaacctacactatatctttctcactttgtcttcaaccttcctaccatctctcttttcatcaccacccact 34241513  T
Q  217 accacatgcaaactcaacaacttcctccgtcggtgtcgcaaccattatcaaactctgaccatttgtttccagccagagatccacttgccagcgatggatt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  ||| ||||||||| ||||||||||    
T  34241514 accacatgcaaactcaacaacttcctccgtcggtgtcgcaaccgttatcgaactctgaccatttgtttccagccgaagacccacttgccggcgatggatt 34241613  T
Q  317 tgagtggatcgaacgaatctagatgtcgtccataaatcaccaccactttcaccaacatcatattgccacaccaccacca 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241614 tgagtggatcgaacgaatctagatgtcgtccataaatcaccaccactttcaccaacatcatattgccacaccaccacca 34241692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 11768602 - 11768752
Alignment:
Q  42 aggtggcatttaggatgcacaaatt--taaatttgtgcaccatacataagttataaatagttatttttgaccattagattaaagaaaaacattgatctta 139  Q
    |||||||||||||| ||||||||||  |||||||||||||||| || |||||| | | | ||| ||||  ||| ||||||||||| |||||||||| |||    
T  11768602 aggtggcatttagggtgcacaaattgttaaatttgtgcaccatgcacaagttagagaaaattacttttagccactagattaaagagaaacattgatttta 11768701  T
Q  140 ttatggtaaacctacactatatctttctcactttgtcttcaaccttcctacc 191  Q
    |||| ||  | |||||| |||  ||||||||||   ||||||||||||||||    
T  11768702 ttatagttcaactacaccata-atttctcacttaaccttcaaccttcctacc 11768752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 42 - 329
Target Start/End: Original strand, 43389191 - 43389476
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagttataaatagttatttttgaccattagattaaagaaaaacattgatcttat 140  Q
    |||||||||||||| |||| || | |||||||||||||||||| | || ||||||||||||||||||||||| ||||||||||| ||||||  |||||||    
T  43389191 aggtggcatttagggtgcaaaattgttaaatttgtgcaccatatacaaattataaatagttatttttgaccagtagattaaagagaaacatcaatcttat 43389290  T
Q  141 tatggtaaacctacactatatctttctcactttgtcttcaaccttcctaccatctctcttttcatcaccacccaccaccacatgcaaactcaacaacttc 240  Q
     ||||| | ||||||||||||| |||||  ||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||    
T  43389291 catggtcagcctacactatatcgttctcg-tttgtcttcaaccttcctaccatctc--ttttcatcaccacccaccaccacaagcaaactcaacagcttc 43389387  T
Q  241 ctccgtcggtgtcgcaaccattatcaaactctgaccatttgtttccagccagagatccacttgccagcgatggatttgagtggatcgaa 329  Q
    ||| | || ||  |||||| ||||| || |||||||||||||||||||||| |||||||||| ||  |||| |||||||||||||||||    
T  43389388 ctctgccgatggagcaaccgttatcgaaatctgaccatttgtttccagccaaagatccacttaccgacgatagatttgagtggatcgaa 43389476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 35442615 - 35442571
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccataca 85  Q
    ||||||||||||||||||||||||  |||||||||||||||||||    
T  35442615 aggtggcatttaggatgcacaaataataaatttgtgcaccataca 35442571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 34134158 - 34134116
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatac 84  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  34134158 ggtggcatttagcatgcacaaatgttaaatttgtgcaccatac 34134116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 49086230 - 49086190
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccat 82  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  49086230 ggtggcatttaggatgcacaaatgtaaaatttgtgcaccat 49086190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 8e-74; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 90 - 329
Target Start/End: Original strand, 41706669 - 41706905
Alignment:
Q  90 ttataaatagttatttttgaccattagattaaagaaaaacattgatcttattatggtaaacctacactatatctttctcactttgtcttcaaccttccta 189  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||   |||||||||||||||||||    
T  41706669 ttataaatagttatttttgaccattagattaaagagaaacattgatcttattatggtcagcctacactatatcgttcttg-tttgtcttcaaccttccta 41706767  T
Q  190 ccatctctcttttcatcaccacccaccaccacatgcaaactcaacaacttcctccgtcggtgtcgcaaccattatcaaactctgaccatttgtttccagc 289  Q
     ||||||  |||||||||||||||||||||||| |||||||||||| ||||||| | || ||  |||||| ||||| || ||||||||||||||||||||    
T  41706768 acatctc--ttttcatcaccacccaccaccacaagcaaactcaacagcttcctctgacgatggagcaaccgttatcgaaatctgaccatttgtttccagc 41706865  T
Q  290 cagagatccacttgccagcgatggatttgagtggatcgaa 329  Q
    |  |||||||||||||| ||||||||||||||||||||||    
T  41706866 cgaagatccacttgccaacgatggatttgagtggatcgaa 41706905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 118
Target Start/End: Complemental strand, 41709640 - 41709562
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagttataa-atagttatttttgaccattagat 118  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| ||||| ||| | | ||||||||| |||||||||    
T  41709640 aggtggcatttagggtgcacaaatgttaaatttgtgcaccatacacaagttttaataaaattatttttggccattagat 41709562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 190
Target Start/End: Complemental strand, 41707478 - 41707328
Alignment:
Q  42 aggtggcatttaggatgcacaaatt--taaatttgtgcaccatacataagttataaatagttatttttgaccattagattaaagaaaaacattgatctta 139  Q
    |||||||||||||| | |||||| |  ||||||||||||||||||| |||||| | | | |||||||| |||||| |||| ||||  |||||| ||||||    
T  41707478 aggtggcatttagggttcacaaactattaaatttgtgcaccatacacaagttagagaaaattatttttaaccatttgatttaagaggaacattaatctta 41707379  T
Q  140 ttatggtaaacctacactatatctttctcactttgtcttcaaccttcctac 190  Q
    | || ||     ||||| |||| ||  |||||||||||||||| |||||||    
T  41707378 taatagtctgtgtacaccatatattcttcactttgtcttcaactttcctac 41707328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 9875412 - 9875370
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatac 84  Q
    |||||||||||| |||||||||| |||||||||||||||||||    
T  9875412 ggtggcatttagcatgcacaaatgttaaatttgtgcaccatac 9875370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 41708415 - 41708464
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    |||||||||||| |||||||||| ||||||||||||||||| || |||||    
T  41708415 ggtggcatttagaatgcacaaatattaaatttgtgcaccatgcacaagtt 41708464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 41883031 - 41883117
Alignment:
Q  98 agttatttttgaccattagattaaagaaaaacattgatcttattatggtaaacctacactatatctttctcactttgtcttcaacct 184  Q
    ||||||||||   |||||||||||||| ||||||| || ||||||| ||  | | ||||||||||||||||||||||||||||||||    
T  41883031 agttatttttagtcattagattaaagagaaacatttattttattatagtctatccacactatatctttctcactttgtcttcaacct 41883117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 10459766 - 10459816
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  10459766 aggtggcatttaggatgcacaaatgttaaatttgtgcaccatacacaagtt 10459816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 27969949 - 27969900
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    |||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  27969949 ggtggcatttaggatgcacaaatactaaatttgtgcaccatacacaagtt 27969900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 8673661 - 8673711
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtta 92  Q
    ||||||||||||| ||||||||  |||||||||||||||||||| ||||||    
T  8673661 ggtggcatttagggtgcacaaacattaaatttgtgcaccatacacaagtta 8673711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 8674735 - 8674690
Alignment:
Q  47 gcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||||    
T  8674735 gcatttaggatgcacaaatgttagatttgtgcaccatacacaagtt 8674690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 23373559 - 23373640
Alignment:
Q  109 accattagattaaagaaaaacattgatc-ttattatggtaaacctacactatatctttctcactttgtcttcaaccttccta 189  Q
    ||||||| || |||||  |||||||||| ||||||| ||   || ||||||||||| |||||||||||||||||||| ||||    
T  23373559 accattatataaaagaggaacattgatccttattatagtctgcccacactatatctctctcactttgtcttcaacctcccta 23373640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 184
Target Start/End: Complemental strand, 17084059 - 17083942
Alignment:
Q  68 aaatttgtgcaccatacataagttata-aatagttatttttgaccattagattaaagaaaaacattgatcttattatggtaaacctacactatatctttc 166  Q
    |||||| ||||||||| | |||||||| || |||||||||| |||||||||||||| |  |||||| |||||||||| ||    ||| ||||||| | ||    
T  17084059 aaatttatgcaccatatacaagttatagaaaagttatttttaaccattagattaaaaaggaacattaatcttattatagtttgtctatactatatatctc 17083960  T
Q  167 tcactttgtcttcaacct 184  Q
    ||||||| ||||||||||    
T  17083959 tcactttttcttcaacct 17083942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 17087784 - 17087735
Alignment:
Q  67 taaatttgtgcaccatacataagttataaatagttatttttgaccattag 116  Q
    ||||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  17087784 taaatttatgcaccatacataagttataaaaagttatttttaaacattag 17087735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 17095759 - 17095710
Alignment:
Q  67 taaatttgtgcaccatacataagttataaatagttatttttgaccattag 116  Q
    ||||||| |||||||||||||||||||||| |||||||||| | ||||||    
T  17095759 taaatttatgcaccatacataagttataaaaagttatttttaaacattag 17095710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 47925546 - 47925596
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    |||||||||||| | ||||||||| |||||||||||||||||||| |||||    
T  47925546 aggtggcatttaaggtgcacaaatgttaaatttgtgcaccatacacaagtt 47925596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 21460130 - 21460179
Alignment:
Q  43 ggtggcatttaggatgcacaaat-ttaaatttgtgcaccatacataagtt 91  Q
    ||||||||||||||||||||||| ||||||||||| ||||| || |||||    
T  21460130 ggtggcatttaggatgcacaaatgttaaatttgtgtaccatgcacaagtt 21460179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 19795323 - 19795275
Alignment:
Q  44 gtggcatttaggatgcacaaatt-taaatttgtgcaccatacataagtt 91  Q
    ||||||||||| |||||||| |  |||||||||||||||||||||||||    
T  19795323 gtggcatttagcatgcacaattgataaatttgtgcaccatacataagtt 19795275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Complemental strand, 45721570 - 45721526
Alignment:
Q  42 aggtggcatttaggatgcacaaat-ttaaatttgtgcaccataca 85  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||    
T  45721570 aggtggcgtttaggatgcacaaataataaatttgtgcaccataca 45721526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University