View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8485_low_7 (Length: 341)
Name: NF8485_low_7
Description: NF8485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8485_low_7 |
 | |
|
| [»] scaffold1088 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 23 - 324
Target Start/End: Complemental strand, 22195161 - 22194860
Alignment:
| Q |
23 |
atggtgttggaggattatggaggcatactattgaatctactaaacttcaaaacccaaaacaaacataccaattttcagattttccatgggattcttctgt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22195161 |
atggtgttggaggattatggaggcatactattgaatctactaaacttcaaaacccaaaacaagcataccaattttcagattttccatgggattcttctgt |
22195062 |
T |
|
| Q |
123 |
aaaagaagataatcccaataaccatcaagtgcaagaatatcttaactcctatgctcaacatttctccatcattccttacataaggttcaattcaaaagtc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22195061 |
aaaagaagataatcccaataaccatcaagtgcaagaatatcttaactcctatgctcaacatttctccatcattccttacataaggttcaattcaaaagtc |
22194962 |
T |
|
| Q |
223 |
attgatattgattatgttggagagtctaatgaagaaatgaagtcatgggaattatggagtggtaatggctctccttttggctcaaagggaacatggcata |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22194961 |
attgatattgattatgttggagagtctaatgaagaaatgaagtcatgggaattatggagtggtaatggctctccttttggctcaaagggaacatggcata |
22194862 |
T |
|
| Q |
323 |
tt |
324 |
Q |
| |
|
|| |
|
|
| T |
22194861 |
tt |
22194860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 99 - 324
Target Start/End: Original strand, 22409406 - 22409631
Alignment:
| Q |
99 |
agattttccatgggattcttctgtaaaagaagataatcccaataaccatcaagtgcaagaatatcttaactcctatgctcaacatttctccatcattcct |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22409406 |
agattttccatgggattcttctgtaaaagaagataatcccaataaccatcaagtgcaagaatatcttaactcctatgctaaacatttctccatcattcct |
22409505 |
T |
|
| Q |
199 |
tacataaggttcaattcaaaagtcattgatattgattatgttggagagtctaatgaagaaatgaagtcatgggaattatggagtggtaatggctctcctt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
22409506 |
tacataaggttcaattcaaaagtcattgatattgattatgttggagagtctaatgaagaaatgaagtcatgggaattatggagtggtaatggcactagtt |
22409605 |
T |
|
| Q |
299 |
ttggctcaaagggaacatggcatatt |
324 |
Q |
| |
|
|||| || |||||||||||||||||| |
|
|
| T |
22409606 |
ttggatccaagggaacatggcatatt |
22409631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1088 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: scaffold1088
Description:
Target: scaffold1088; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 29 - 321
Target Start/End: Original strand, 2480 - 2772
Alignment:
| Q |
29 |
ttggaggattatggaggcatactattgaatctactaaacttcaaaacccaaaacaaacataccaattttcagattttccatgggattcttctgtaaaaga |
128 |
Q |
| |
|
|||| ||| ||||||| ||||||||| | ||||| ||||| |||| | ||||||| | ||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2480 |
ttggtggaatatggagacatactattcagtctaccaaactccaaaccaaaaaacaagatttccagtttacagattttccatgggattcttctgtaaaaga |
2579 |
T |
|
| Q |
129 |
agataatcccaataaccatcaagtgcaagaatatcttaactcctatgctcaacatttctccatcattccttacataaggttcaattcaaaagtcattgat |
228 |
Q |
| |
|
|||| ||| | ||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
2580 |
agattttccaagtaatcaacaagtgcaagattatcttaactcctatgctcaacatttttccatcattccatacatcagattcaattcaaaagtcattgat |
2679 |
T |
|
| Q |
229 |
attgattatgttggagagtctaatgaagaaatgaagtcatgggaattatggagtggtaatggctctccttttggctcaaagggaacatggcat |
321 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||||||||| |||||||||||||| ||| ||||| || |||||||| |||||| |
|
|
| T |
2680 |
attgattatgttggggagtctcatgaagaaatgaagacatgggaattgtggagtggtaatggaagtccatttggttctaagggaacttggcat |
2772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University