View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8485_low_9 (Length: 316)
Name: NF8485_low_9
Description: NF8485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8485_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 53491507 - 53491223
Alignment:
| Q |
20 |
caaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaagg |
119 |
Q |
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| T |
53491507 |
caaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaagg |
53491408 |
T |
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| Q |
120 |
aagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491407 |
aagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgc |
53491308 |
T |
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| Q |
220 |
tcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
304 |
Q |
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| T |
53491307 |
tcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 53499100 - 53498819
Alignment:
| Q |
20 |
caaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaagg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| | |
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| T |
53499100 |
caaggaatctatgacacttgtaaagcaactgtgaatatgctgtgtgaagcaaaaa-tacgtgctgagttagattctagagatagctactctcctgaaaag |
53499002 |
T |
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| Q |
120 |
aagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgc |
219 |
Q |
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| T |
53499001 |
aagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgttgc |
53498902 |
T |
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| Q |
220 |
tcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
304 |
Q |
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| T |
53498901 |
tcttatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 16070185 - 16069958
Alignment:
| Q |
21 |
aaggaatctatgacacttgtaaagcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaagga |
120 |
Q |
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| T |
16070185 |
aaggaatcaatgacgcttgtaaagcagccgtgaagatgttgcgtgaag-aaaaaattcgtgccgagttagattctagagataactattctcttgaaagaa |
16070087 |
T |
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| Q |
121 |
agtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttgct |
220 |
Q |
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|||||||||| |||||| |||||||||||||| ||| | |||||||||||| ||||| ||||| ||||||||||||||| ||||||| | || |||| |
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| T |
16070086 |
agtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaatgttgttatattattgca |
16069987 |
T |
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| Q |
221 |
cttatattcttacatatgtcattttgctt |
249 |
Q |
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||| ||||||| ||||||||||| ||||| |
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| T |
16069986 |
cttgtattctttcatatgtcattatgctt |
16069958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 163
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
125 |
ttctgattgggaattgaaaggtgtccctctaaggattga |
163 |
Q |
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| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 196
Target Start/End: Original strand, 45355289 - 45355440
Alignment:
| Q |
44 |
gcaactgtgaatatgttgtgtgaagcaaaaaatacgtgctgagttagattctagagataactgttctcctgaaaggaagtattctgattgggaattgaaa |
143 |
Q |
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||||||||||||||||||| |||||| || | |||||||||| |||| | ||||| |||| |||||||| | |||| |||||| | |||||| ||||| |
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| T |
45355289 |
gcaactgtgaatatgttgttggaagcaggaatt-cgtgctgagtcagatgccagagacaactattctcctggatggaaatattctcagtgggaaatgaaa |
45355387 |
T |
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| Q |
144 |
ggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggt |
196 |
Q |
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||||| ||||||||||||||||| ||||| |||||||||| |||||||||||| |
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| T |
45355388 |
ggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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