View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8486_high_10 (Length: 267)
Name: NF8486_high_10
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8486_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 8797918 - 8798066
Alignment:
| Q |
1 |
tgagttacagaagaagggttagtgtgaggcattggtgccnnnnnnnggttttaccttcccaatgaaaactctaccttcctttttctgcactgccactgat |
100 |
Q |
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| T |
8797918 |
tgagttacagaagaagggttagtgtgaagcattggtgccaaaaaaaggttttaccttcccaatgaaaactctaccttcctttttctgcactgccactgat |
8798017 |
T |
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| Q |
101 |
acccctgccatacaaaagcagtggagtgagagacaagagaacaagcaag |
149 |
Q |
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| T |
8798018 |
acccctgccatacaaaagcagtggagtgagagacaagagaacaagcaag |
8798066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 8798096 - 8798162
Alignment:
| Q |
179 |
ggagagaggtagtaataaatagtgagctaggaacgatcaaatcgaggaggagaaaacaagttaccta |
245 |
Q |
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| T |
8798096 |
ggagagaggtagtaataaatagtgagctaggaacgatcaaatcgaggaggagaaaacaagttaccta |
8798162 |
T |
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