View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8486_high_16 (Length: 235)
Name: NF8486_high_16
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8486_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 219
Target Start/End: Complemental strand, 29412846 - 29412641
Alignment:
| Q |
14 |
gacatcaaacactttgttcatgtctggtcacttcgcctttccaccaagtaagcatgaaaacttgccattggaaatggactatagtgagattcagaatgaa |
113 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29412846 |
gacatcgaacgctttgttcatgtctggtcacttcgcctttccaccaagtaagcatgaaaacttgccattggaaaaggactatagtgagattcagaatgaa |
29412747 |
T |
|
| Q |
114 |
tccggagacaaaggtgttgcctttgaagagacttatgaagaagcagccaagcctagtggaaaggatgaagaaaacttgacattagaaggattggatgtgt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29412746 |
tccggagacaaaggtgttgcctttgaagagacttatgaagaagcatccaagcctagtggaaaggatgaagaaaacttgacattagaaggattggatgtgt |
29412647 |
T |
|
| Q |
214 |
caaagg |
219 |
Q |
| |
|
|||||| |
|
|
| T |
29412646 |
caaagg |
29412641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 10161333 - 10161538
Alignment:
| Q |
14 |
gacatcaaacactttgttcatgtctggtcacttcgcctttccaccaagtaagcatgaaaacttgccattggaaatggactatagtgagattcagaatgaa |
113 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
10161333 |
gacatcgaacgctttgttcatgtctggtcacttcgcctttccaccaagtaagcatgaaaacttgccattggaaacagactatagtgagattcataatgaa |
10161432 |
T |
|
| Q |
114 |
tccggagacaaaggtgttgcctttgaagagacttatgaagaagcagccaagcctagtggaaaggatgaagaaaacttgacattagaaggattggatgtgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10161433 |
tccggagacaaaggtgttgcctttgaagagacttatgaagaagcagccaagcctagtggaaaggatgaagaaaacttgacattagaaggattggatgtgt |
10161532 |
T |
|
| Q |
214 |
caaagg |
219 |
Q |
| |
|
|||||| |
|
|
| T |
10161533 |
caaagg |
10161538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University