View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8486_high_18 (Length: 211)
Name: NF8486_high_18
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8486_high_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27291822 - 27292032
Alignment:
| Q |
1 |
ataaggcccattttctctgcttcaacagccgtatagaaccttgtgagaaaccacatttcgcgtgcttttttaggacctacctgtattgagaagcacattt |
100 |
Q |
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| T |
27291822 |
ataaggcccattttctctgcttcaacagccgtatagaaccttgtgagaaaccacatttcgcgtgcttttttaggacctacctgtattgagaagcacattt |
27291921 |
T |
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| Q |
101 |
tttatcttttggattggaaacatcaaaatgctatagcaaacaaaatctatcatataactttaatcctcaccaaacgtgacatgatagaacttccataacc |
200 |
Q |
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| T |
27291922 |
tttatcttttggattggaaacatcaaaatgctatagcaaacaaaatctatcatataactttaatcctcaccaaacgtgacatgatagaacttccataacc |
27292021 |
T |
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| Q |
201 |
agcatcgaagc |
211 |
Q |
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| T |
27292022 |
agcatcgaagc |
27292032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 26162631 - 26162668
Alignment:
| Q |
174 |
acgtgacatgatagaacttccataaccagcatcgaagc |
211 |
Q |
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| T |
26162631 |
acgtgacatgatagaacttcaataaccagcatcaaagc |
26162668 |
T |
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