View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8486_low_1 (Length: 592)
Name: NF8486_low_1
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8486_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 395; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 141 - 572
Target Start/End: Original strand, 13113971 - 13114398
Alignment:
| Q |
141 |
ataaaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctgcgagtgttgcatgaag |
240 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13113971 |
ataaaaataattcaagatggttttgaagaaattggtagaaggtacatacaacagggagtacagggtacaatctcaatgtctctgtgagtgttgcatgaag |
13114070 |
T |
|
| Q |
241 |
ataatgcattttatcaagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttct |
340 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13114071 |
ataatgcattttatcgagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttct |
13114170 |
T |
|
| Q |
341 |
tgcacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttga |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13114171 |
tgcacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttga |
13114270 |
T |
|
| Q |
441 |
gaattatatatatccctcaaatacttatcagttatagttgtttggccattcttgctttccatcaaaaaccttgatagtatgtcttctttaacattctgaa |
540 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13114271 |
gaat----tatatccctcaaatacttatcagttatagttgtttggccattcttgctttccatcaaaaaccttgatagtatgtcttctttaacattctgaa |
13114366 |
T |
|
| Q |
541 |
aaaacaaataaaccattcttattcctacttga |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
13114367 |
aaaacaaataaaccattcttattcctacttga |
13114398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 143 - 543
Target Start/End: Original strand, 13102999 - 13103395
Alignment:
| Q |
143 |
aaaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctgcgagtgttgcatgaagat |
242 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
13102999 |
aaaaataacttaagatggtttcgaagaaattggtagaaggtacatacaataggaacaacaggatacaatctcaatgtctctgtgagtgctgcatgaagat |
13103098 |
T |
|
| Q |
243 |
aatgcattttatcaagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttcttg |
342 |
Q |
| |
|
||||||||||||||||||||| || ||||||||| || |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13103099 |
aatgcattttatcaagtattacatccgttaaattgccagcaaattcatctatgttgttgagttcactttcatggctacaagtaacatcttttatttcttg |
13103198 |
T |
|
| Q |
343 |
cacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttgaga |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
13103199 |
cacaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtgtttgcagtggtatctttgccagctatcataaagttgaga |
13103298 |
T |
|
| Q |
443 |
attatatatatccctcaaatacttatcagttatagttgtttggccattcttgctttccatcaaaaaccttgatagtatgtcttctttaacattctgaaaa |
542 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13103299 |
at----tatatccctcaaatatttatcagttatagttgtttggccattcttgctttccatcaaaaaccttgatagtatgtcttctttaacattctgaaaa |
13103394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 144 - 562
Target Start/End: Original strand, 13097848 - 13098259
Alignment:
| Q |
144 |
aaaataattcaagatggtttcgaagaaattggtagaaggtacatacgatagggagtacagggtacaatctcaatgtctctgcgagtgttgcatgaagata |
243 |
Q |
| |
|
||||||| ||||||||||| ||| |||| |||||||||||||| | ||||| |||||||||||||| || ||||||| ||||| |||||||||||| |
|
|
| T |
13097848 |
aaaataactcaagatggttgagaa--aatttatagaaggtacataccacagggacaacagggtacaatcttaaggtctctgtgagtgctgcatgaagata |
13097945 |
T |
|
| Q |
244 |
atgcattttatcaagtattaagtctgttaaattggcaacaaactcatctatgctgttgagttcactttcatggctacaagtaacatctcttatttcttgc |
343 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| | |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13097946 |
atgcattttatcaagtattgagtctgttagattggtagcaaactcatctatgttgctgagttcactttcatggaaacaagtaacatctcttatttcttgc |
13098045 |
T |
|
| Q |
344 |
acaatcttgtcctctacaagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttgagaa |
443 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13098046 |
acaatcttgtcctccacaatagggttcttgcataacatgtagaagaaccatgaaagagtatttgcagtggtgtctttgccagctatcataaagttgagaa |
13098145 |
T |
|
| Q |
444 |
ttatatatatccctcaaatacttatcagttatagttgtttggccattcttgctttccatcaaaaaccttgatagtatgtcttctttaacattctgaaaaa |
543 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
13098146 |
t----tatatccctcaaatatttatcagttatagttgtttggcccttcttgctttccatcaaaaaccttgatagtatgtcttctttaacattctg-ataa |
13098240 |
T |
|
| Q |
544 |
acaaataaaccattcttat |
562 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
13098241 |
acaaataaaccattcttat |
13098259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 13113693 - 13113828
Alignment:
| Q |
19 |
acatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagacacaaa------------atctaacatataatgttgtttataggtg |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
13113693 |
acatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagacacaaaaatatcatcaaaatctaacatgtaatgttgtttataggtg |
13113792 |
T |
|
| Q |
107 |
cattttaacatggaaatatttagattacagtcacat |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
13113793 |
cattttaacatggaaatatttagattacagtcacat |
13113828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 18670929 - 18670794
Alignment:
| Q |
19 |
acatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagacacaaaa------------tctaacatataatgttgtttataggtg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
18670929 |
acatccggcgcatcagcagttcttccatccttgaaaaatagtatcataacaagacacaaaaatatcatcaaaatctaacatgtaatgttgtttataggtg |
18670830 |
T |
|
| Q |
107 |
cattttaacatggaaatatttagattacagtcacat |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
18670829 |
cattttaacatggaaatatttagattacagtcacat |
18670794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 361 - 447
Target Start/End: Original strand, 13078092 - 13078178
Alignment:
| Q |
361 |
aagagggttcttgcatagcatatagaagaaccatgaaagagtatttgcagtagtgtctttgccagctatcataaagttgagaattat |
447 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| | |||||| ||| | |||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
13078092 |
aagagggttcttgcaaagcatgtagaagaaccatgacaaagtattggcacttgtgtcttttccagcaatcataaagttcagaattat |
13078178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 13095530 - 13095568
Alignment:
| Q |
28 |
gcatcagcagttcttccatccttgaaaaatagtatcata |
66 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13095530 |
gcatccgcagttcttccatccttgaaaaatagtatcata |
13095568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University