View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8486_low_14 (Length: 241)
Name: NF8486_low_14
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8486_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 22877470 - 22877247
Alignment:
| Q |
1 |
tgtcttctacacaggagttgatacgcaccttgtggaaaaaattctgaatccttcctatcttgatagagacaaaactacattcaaaggcctgaaaaatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22877470 |
tgtcttctacacaggagttgatacgcaccttgtggaaaaaattctgaatccttcctatcttgatagagacaaaactacattcaaaggcctgaaaaatgtt |
22877371 |
T |
|
| Q |
101 |
cttgaaagtacaggaaactcagcaacagcatgggttggtgagtcaggaggggcttataacagtggccatcatcttgtatccgatgcatttgtgtatagtt |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22877370 |
cttgaaagtacaggaacctcagcaacagcatgggttggtgagtcaggaggggcttataacagtggccatcatcttgtatccgatgcatttgtgtatagtt |
22877271 |
T |
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| Q |
201 |
tctggttagtgctgactatccttg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
22877270 |
tctggttagtgctgactatccttg |
22877247 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 38357113 - 38357007
Alignment:
| Q |
105 |
aaagtacaggaaactcagcaacagcatgggttggtgagtcaggaggggcttataacagtggccatcatcttgtatccgatgcatttgtgtatagtttctg |
204 |
Q |
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||||| |||||| | |||| | |||||||||||||||| | ||||| ||| | | |||||||||||||||||||| ||||||||| | | || ||||| |
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| T |
38357113 |
aaagttcaggaatcacagctaaagcatgggttggtgaggctggaggtgctcaccatagtggccatcatcttgtatctgatgcatttttcaacagcttctg |
38357014 |
T |
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| Q |
205 |
gttagtg |
211 |
Q |
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||||||| |
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| T |
38357013 |
gttagtg |
38357007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 47979583 - 47979499
Alignment:
| Q |
127 |
agcatgggttggtgagtcaggaggggcttataacagtggccatcatcttgtatccgatgcatttgtgtatagtttctggttagtg |
211 |
Q |
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|||||||||||| ||| | || || |||| || ||||||||||||||||| || ||||||||||| | || |||||||||||| |
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| T |
47979583 |
agcatgggttggagaggctggtggtgcttggaatagtggccatcatcttgtgtctgatgcatttgtcaacagcttctggttagtg |
47979499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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