View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8486_low_15 (Length: 241)

Name: NF8486_low_15
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8486_low_15
NF8486_low_15
[»] chr2 (1 HSPs)
chr2 (20-229)||(3552156-3552354)
[»] chr1 (2 HSPs)
chr1 (20-211)||(40213742-40213934)
chr1 (87-217)||(17895145-17895275)
[»] chr7 (2 HSPs)
chr7 (20-215)||(34935116-34935312)
chr7 (20-183)||(25617184-25617348)
[»] chr8 (2 HSPs)
chr8 (85-206)||(36017450-36017571)
chr8 (20-130)||(29960100-29960211)
[»] chr4 (1 HSPs)
chr4 (22-209)||(19585931-19586120)
[»] chr6 (1 HSPs)
chr6 (85-215)||(2900885-2901015)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 3552354 - 3552156
Alignment:
Q  20 acaaaaccacagagtacacatgattgaaattttgtcgaaaccgaaccttctcttccgatgtgtgaccatcttctcttgcacttctgatgcaatcccgaaa 119  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3552354 acaaaaccacagagtacacatgattgaaattttttcgaaaccgaaccttctcttccgacgtgtgaccatcttctcttgcacttctgatgcaatcccgaaa 3552255  T
Q  120 cttttaaaccccgcggatctcaacaaatctgtaatggaattagaaaaacaaagccaaaaatgaatcacatccatcttgcaagtgaaacacggaaccacta 219  Q
    |||           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  3552254 ctt-----------ggatctcaacaaatctgtaatggaattagaaaaacaaagccaaaaatgaatcgcatccatcttgcaagtgaaacacgaaaccacta 3552166  T

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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 211
Target Start/End: Complemental strand, 40213934 - 40213742
Alignment:
Q  20 acaaaaccacagagtacacatgattgaaattttgtcgaaaccgaaccttctcttccgatgtgtgacc-atcttctcttgcacttctgatgcaatcccgaa 118  Q
    ||||||| ||| |||||||| ||| |||||| ||||||||| ||||||||||||||||  ||| ||| ||||| ||||||||  | |  |||||||||||    
T  40213934 acaaaactacaaagtacacaagatcgaaattatgtcgaaacagaaccttctcttccgacttgtaacctatcttttcttgcacgacaggcgcaatcccgaa 40213835  T
Q  119 acttttaaaccccgcggatctcaacaaatctgtaatggaattagaaaaacaaagccaaaaatgaatcacatccatcttgcaagtgaaacacgg 211  Q
    ||||| |||||| || ||||||||||||||||||||||||| |  |||||||||||||||||||| | || ||||||||||||| ||||||||    
T  40213834 actttgaaaccctgcagatctcaacaaatctgtaatggaatcaagaaaacaaagccaaaaatgaaccgcagccatcttgcaagttaaacacgg 40213742  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 217
Target Start/End: Complemental strand, 17895275 - 17895145
Alignment:
Q  87 atcttctcttgcacttctgatgcaatcccgaaacttttaaaccccgcggatctcaacaaatctgtaatggaattagaaaaacaaagccaaaaatgaatca 186  Q
    ||||||||||||||   ||| ||||||| |||||||| |||||  ||  ||||||||||||||  |||||||| ||||||||||||  ||||||||| ||    
T  17895275 atcttctcttgcacgattgacgcaatcctgaaactttgaaaccttgcaaatctcaacaaatcttgaatggaatcagaaaaacaaagtaaaaaatgaacca 17895176  T
Q  187 catccatcttgcaagtgaaacacggaaccac 217  Q
    || ||||| |||||||||||||| |||||||    
T  17895175 caaccatcgtgcaagtgaaacacagaaccac 17895145  T

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Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 34935312 - 34935116
Alignment:
Q  20 acaaaaccacagagtacacatgattgaaattttgtcgaaaccgaaccttctcttccgatgtgtgacc-atcttctcttgcacttctgatgcaatcccgaa 118  Q
    |||||||| || |||||||| |||  ||||| | ||||||||||||||| |||||||| |||||||| ||||||||||||||  ||||  ||||||||||    
T  34935312 acaaaaccgcaaagtacacaggatcaaaattctatcgaaaccgaaccttatcttccgacgtgtgacccatcttctcttgcacgactgacacaatcccgaa 34935213  T
Q  119 acttttaaaccccgcggatctcaacaaatctgtaatggaattagaaaaacaaagccaaaaatgaatcacatccatcttgcaagtgaaacacggaacc 215  Q
    ||||| |||||| || ||||||||||||| ||||||||| | |  ||||||||||||||||||||   || ||||||||||||| ||||||| ||||    
T  34935212 actttgaaaccctgcagatctcaacaaatttgtaatggagtcaagaaaacaaagccaaaaatgaactgcaaccatcttgcaagtaaaacacgaaacc 34935116  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 25617184 - 25617348
Alignment:
Q  20 acaaaaccacagagtacacatgattgaaattttgtcgaaaccgaaccttctcttccgatgtgtgacc-atcttctcttgcacttctgatgcaatcccgaa 118  Q
    ||||||||||| ||||||||||||  ||| |||  |||||  ||||||||| |||| | |||||||| ||||||| ||||||  ||||  |||| |||||    
T  25617184 acaaaaccacatagtacacatgatcaaaaattttccgaaattgaaccttctattccaacgtgtgacccatcttcttttgcacgactgacacaataccgaa 25617283  T
Q  119 acttttaaaccccgcggatctcaacaaatctgtaatggaattagaaaaacaaagccaaaaatgaa 183  Q
    ||||  |||||| |  || |||||||||| ||||||||||| |  ||||||||||||||||||||    
T  25617284 acttaaaaaccctgtagaactcaacaaatatgtaatggaatgaagaaaacaaagccaaaaatgaa 25617348  T

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Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 36017450 - 36017571
Alignment:
Q  85 ccatcttctcttgcacttctgatgcaatcccgaaacttttaaaccccgcggatctcaacaaatctgtaatggaattagaaaaacaaagccaaaaatgaat 184  Q
    |||||||| |||||||  |||| ||||||| |||||||| |||||| || ||||||||||||||||||||||||| || ||||||||| ||||||||||     
T  36017450 ccatcttcccttgcacgactgacgcaatcctgaaactttgaaaccctgcagatctcaacaaatctgtaatggaatcaggaaaacaaagtcaaaaatgaac 36017549  T
Q  185 cacatccatcttgcaagtgaaa 206  Q
    | |||||||||||||| |||||    
T  36017550 cgcatccatcttgcaattgaaa 36017571  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 29960100 - 29960211
Alignment:
Q  20 acaaaaccacagagtacacatgattgaaattttgtcgaaaccgaaccttctcttccgatgtgtgac-catcttctcttgcacttctgatgcaatcccgaa 118  Q
    |||||||||||||||||||| |||  ||||| |||| |||| |||||||||||| | | ||||||| |||||||||||||||  |||| |||||||||||    
T  29960100 acaaaaccacagagtacacaagatcaaaattatgtcaaaactgaaccttctctttcaacgtgtgactcatcttctcttgcacgactgacgcaatcccgaa 29960199  T
Q  119 acttttaaaccc 130  Q
    ||||| ||||||    
T  29960200 actttgaaaccc 29960211  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 19585931 - 19586120
Alignment:
Q  22 aaaaccacagagtacacatgattgaaattttgtcgaaaccgaaccttctcttccgatgtgtga-ccatcttctcttgcacttctgatgcaatcccgaaac 120  Q
    ||||||||| |||||||| ||| |||||| ||| |||||||||||||||||||||| |||||| |||||||||||  |||  || |   |||| ||||||    
T  19585931 aaaaccacatagtacacaagatcgaaattatgtggaaaccgaaccttctcttccgacgtgtgacccatcttctctaacacgactaacataatctcgaaac 19586030  T
Q  121 ttttaaaccccgcggatctcaacaaatctgtaatggaattagaaaaacaaagcc-aaaaatgaatcacatccatcttgcaagtgaaacac 209  Q
    ||| |||||| || ||||| || |||| |||||||||||||| ||||||||||| ||||| ||| | ||  |||||||||||||||||||    
T  19586031 tttgaaaccctgcagatctaaaaaaatttgtaatggaattaggaaaacaaagccaaaaaaagaaccgcagacatcttgcaagtgaaacac 19586120  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 2900885 - 2901015
Alignment:
Q  85 ccatcttctcttgcacttctgatgcaatcccgaaacttttaaaccccgcggatctcaacaaatctgtaatggaattagaaaaacaaagccaaaaatgaat 184  Q
    |||||||| |||||||  |||| ||| ||| |||||||| ||| || |  ||||||| ||||||| |||| ||||||| ||||  ||||||||||||||     
T  2900885 ccatcttcccttgcacggctgacgcattcctgaaactttgaaatcctggagatctcagcaaatctataatagaattaggaaaaacaagccaaaaatgaac 2900984  T
Q  185 cacatccatcttgcaagtgaaacacggaacc 215  Q
    | || |||| |||||| ||||||| ||||||    
T  2900985 cgcagccattttgcaattgaaacatggaacc 2901015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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