View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8486_low_17 (Length: 230)

Name: NF8486_low_17
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8486_low_17
NF8486_low_17
[»] chr8 (12 HSPs)
chr8 (1-214)||(43185979-43186192)
chr8 (1-168)||(31318803-31318971)
chr8 (1-165)||(44081781-44081946)
chr8 (1-167)||(10203663-10203830)
chr8 (1-166)||(42162598-42162764)
chr8 (1-166)||(30432339-30432504)
chr8 (1-166)||(36189216-36189380)
chr8 (4-163)||(12665347-12665508)
chr8 (1-163)||(18184556-18184718)
chr8 (70-160)||(33726017-33726107)
chr8 (73-161)||(3690700-3690788)
chr8 (75-119)||(31547-31591)
[»] chr4 (12 HSPs)
chr4 (1-166)||(49243815-49243980)
chr4 (1-166)||(3672274-3672440)
chr4 (1-167)||(28093121-28093288)
chr4 (1-168)||(6112628-6112795)
chr4 (1-167)||(44275705-44275871)
chr4 (1-167)||(21390981-21391147)
chr4 (1-167)||(7217764-7217931)
chr4 (3-167)||(46192358-46192522)
chr4 (1-167)||(35544911-35545078)
chr4 (70-166)||(45829352-45829448)
chr4 (70-119)||(51038810-51038859)
chr4 (80-167)||(52191305-52191392)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-162)||(6722-6884)
[»] chr7 (24 HSPs)
chr7 (1-178)||(26972228-26972405)
chr7 (1-166)||(34108426-34108592)
chr7 (1-167)||(36346590-36346756)
chr7 (1-166)||(30887700-30887865)
chr7 (3-166)||(45782687-45782851)
chr7 (1-160)||(31148296-31148455)
chr7 (1-170)||(7700502-7700672)
chr7 (1-166)||(28307520-28307686)
chr7 (1-163)||(34828069-34828230)
chr7 (1-166)||(7699908-7700074)
chr7 (1-166)||(7700106-7700272)
chr7 (1-166)||(7700304-7700470)
chr7 (14-166)||(5811202-5811354)
chr7 (70-160)||(23980137-23980227)
chr7 (1-166)||(42220988-42221154)
chr7 (14-166)||(13108148-13108299)
chr7 (24-166)||(15020282-15020421)
chr7 (3-162)||(21807350-21807509)
chr7 (1-66)||(29953597-29953663)
chr7 (73-161)||(38321014-38321102)
chr7 (38-129)||(20086691-20086782)
chr7 (70-148)||(36957447-36957525)
chr7 (70-115)||(46475075-46475120)
chr7 (71-119)||(42950109-42950157)
[»] chr3 (21 HSPs)
chr3 (1-166)||(34749923-34750089)
chr3 (1-166)||(22894680-22894846)
chr3 (1-167)||(21559560-21559727)
chr3 (1-167)||(36370363-36370530)
chr3 (1-167)||(46111969-46112136)
chr3 (1-169)||(43999986-44000155)
chr3 (1-173)||(51339809-51339979)
chr3 (1-167)||(36749405-36749572)
chr3 (1-163)||(48200688-48200851)
chr3 (70-166)||(29460660-29460756)
chr3 (70-166)||(29471512-29471608)
chr3 (70-166)||(38231293-38231389)
chr3 (1-167)||(30735521-30735687)
chr3 (14-168)||(39467140-39467294)
chr3 (3-158)||(20856182-20856334)
chr3 (38-167)||(50966130-50966255)
chr3 (38-167)||(51069265-51069390)
chr3 (70-170)||(39072368-39072468)
chr3 (1-65)||(29472910-29472974)
chr3 (73-121)||(45569343-45569391)
chr3 (73-141)||(53638160-53638228)
[»] chr2 (11 HSPs)
chr2 (1-166)||(33732569-33732734)
chr2 (2-167)||(14572994-14573160)
chr2 (1-167)||(16089821-16089986)
chr2 (1-163)||(44958116-44958279)
chr2 (3-168)||(37498890-37499058)
chr2 (3-167)||(37914265-37914428)
chr2 (3-166)||(36315561-36315724)
chr2 (1-167)||(3830923-3831087)
chr2 (70-119)||(24137187-24137236)
chr2 (70-166)||(6376333-6376424)
chr2 (3-129)||(41188806-41188932)
[»] chr6 (6 HSPs)
chr6 (1-167)||(15345685-15345849)
chr6 (1-167)||(3986931-3987097)
chr6 (1-166)||(13697569-13697733)
chr6 (14-166)||(14022934-14023086)
chr6 (1-167)||(3118072-3118239)
chr6 (3-166)||(24208444-24208607)
[»] chr5 (17 HSPs)
chr5 (1-166)||(39370927-39371093)
chr5 (1-169)||(13347125-13347294)
chr5 (1-171)||(9408064-9408235)
chr5 (1-166)||(2237276-2237442)
chr5 (1-167)||(40887967-40888134)
chr5 (14-167)||(1815655-1815808)
chr5 (1-151)||(14831559-14831710)
chr5 (1-167)||(27553399-27553565)
chr5 (14-167)||(4300582-4300735)
chr5 (1-135)||(31800589-31800723)
chr5 (22-168)||(17225317-17225461)
chr5 (69-166)||(33404530-33404627)
chr5 (70-166)||(19596162-19596258)
chr5 (38-119)||(19124535-19124615)
chr5 (1-95)||(42683670-42683765)
chr5 (78-163)||(12164254-12164339)
chr5 (3-141)||(41003879-41004015)
[»] chr1 (7 HSPs)
chr1 (1-166)||(34307163-34307329)
chr1 (1-162)||(2509028-2509190)
chr1 (1-169)||(39249888-39250057)
chr1 (1-166)||(46901760-46901926)
chr1 (14-167)||(19258711-19258864)
chr1 (14-166)||(28647353-28647505)
chr1 (43-162)||(29099821-29099939)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-162)||(87188-87350)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 43186192 - 43185979
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||     
T  43186192 tcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttttcatcttttctttcaatgtttttgccac 43186093  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctctataatttaataccgactgttgttannnnnnngt 200  Q
    || |||||||||||||  | | ||||||  ||||||||||| ||  ||||| |||||||||| ||||||||||||| ||||||||||||||       ||    
T  43186092 atatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataagaactctataatttaacaccgactgttgttatttttttgt 43185993  T
Q  201 tttgaaagatttcc 214  Q
    ||||||||||||||    
T  43185992 tttgaaagatttcc 43185979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 31318971 - 31318803
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    ||||||||||||||| |||||||| ||||||||||   ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  31318971 tcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 31318872  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctcta 168  Q
      |||||||||||||||||||| ||||| | ||||||||||| ||| ||||| ||||||||||||||||    
T  31318871 cgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctcta 31318803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 44081946 - 44081781
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||||| || ||||||||||  ||||||||||||||||||||||||||| |||    
T  44081946 tcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctcttctttcaatgttttttcca 44081847  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagct 165  Q
      ||| |||||||||||||| | ||||||| | ||||||||| ||||||||| |||||||||||||    
T  44081846 cgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 10203830 - 10203663
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||  |||||||||||||| ||||||||||||| |||| |||||||||||||||||||| |||  ||||||||||||||||||||| |||||| ||    
T  10203830 tcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccaccctttttcatctcttctttcaatatttttgtca 10203731  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
      |||||||||||||||||||| ||||||||| |||| |||| ||| ||||| |||||||||| ||||    
T  10203730 cgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataagaactct 10203663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 42162764 - 42162598
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||| ||||||||||||| |||||||||||  ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||| ||    
T  42162764 tcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtca 42162665  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||||||| ||| | ||||||| | |||| |||| ||| ||||| ||||||||||||||    
T  42162664 cgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 30432504 - 30432339
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| ||||||||||| ||||| ||||| ||  |||| |||||||||| |||||||||||||   ||||||||||||||||||||||||||||||     
T  30432504 tcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccac 30432405  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
     |||||||||||||||||| | ||||||| | ||||||| | ||| ||||| ||||||||||||||    
T  30432404 gtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 36189380 - 36189216
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    ||||||||  ||||||||||||| || | ||||||  |||| | ||||||||||||||||||||||   |||||||||||||||||||| |||||||||     
T  36189380 tcatacaccacttatgtacaccc-atatgttaggggtattttaataattttatatcatatcatcactccttttcatctcttctttcaatatttttgccac 36189282  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
     |||||||||||| ||||| | ||||||| | ||||||||| ||||||||| ||||||||||||||    
T  36189281 gtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 12665508 - 12665347
Alignment:
Q  4 tacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcaca-ttttttcatctcttctttcaatgtttttgccata 101  Q
    ||||| ||||||||| |||| ||||| ||||||  |||| |||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||| |    
T  12665508 tacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcaccctttttttatctcttctttcaatgtttttgccaca 12665409  T
Q  102 tgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagag 163  Q
    ||| |||||||||||||  | ||||||| | ||||||||| ||| ||||| |||||||||||    
T  12665408 tgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 18184718 - 18184556
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| | ||||||||||| ||||| ||||||  |||| ||||||||||||||||||||||||   ||||||||||||| |||||||||||  |||     
T  18184718 tcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcaccccttttcatctcttcattcaatgttttcaccac 18184619  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagag 163  Q
     |||||||||| ||||||||| ||||||| | |||| |||  ||| ||||| || ||||||||    
T  18184618 gtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 33726107 - 33726017
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataa 160  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||| | ||||| | | ||||||||| ||  ||||||||||||||    
T  33726107 ttttcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 161
Target Start/End: Original strand, 3690700 - 3690788
Alignment:
Q  73 tcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataag 161  Q
    ||||||||||||| ||| |||| || | ||||||||| ||||||||||| | ||||||| |||| |||| |||||| || |||||||||    
T  3690700 tcatctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 31547 - 31591
Alignment:
Q  75 atctcttctttcaatgtttttgccatatgtcacaaatgtgtgtgg 119  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgg 31591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 49243980 - 49243815
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| |||||||||||| |||||||||||||  |||| |||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||     
T  49243980 tcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcacttttttttatctcttctttcaatgtttttgccac 49243881  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    ||||||||||||||||||||| ||||||| | ||||||||| ||| ||||| ||||||||||||||    
T  49243880 atgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 3672440 - 3672274
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||| || |||||||||||||  |||||||||||||||||||||||||||||||    
T  3672440 tcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 3672341  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||||||||||||| ||||||| | ||||||||| ||| ||||| ||||||||||||||    
T  3672340 cgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28093121 - 28093288
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||| ||||| |||||||||||||  |||||||||||| ||||||||||||||||||    
T  28093121 tcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttttcatctctcctttcaatgtttttgcca 28093220  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
      |||||||||||||||||| | ||||||| | ||||||||| ||| ||||| |||||||||||||||    
T  28093221 cgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 28093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 6112795 - 6112628
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||     
T  6112795 tcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatgtttttgccac 6112696  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctcta 168  Q
     |||||||||| ||||||| | ||||| | | ||||||| | ||| ||||| ||||||||||||||||    
T  6112695 gtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctcta 6112628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 44275871 - 44275705
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| ||||||||||||||||||| ||||||  |||| |||||||||| |||||||||||||  ||||| ||||||||||||||| |||||| ||     
T  44275871 tcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttaatctcttctttcaatatttttggcac 44275772  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     |||||||||||||||||  | ||||| | ||||||||||| ||| |||||||||||||||||||||    
T  44275771 gtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctct 44275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 21390981 - 21391147
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| | ||||||||||| ||||| ||||||  |||| |||||||||| |||||||  ||||   |||||||||||||||||||| |||||||||     
T  21390981 tcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttcatctcttctttcaatatttttgccac 21391080  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     |||||||||||||||||| | ||||||| | ||||||| | ||| ||||| |||||||||||||||    
T  21391081 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctct 21391147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 7217931 - 7217764
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| |||||||||||||| ||||| |||  |  |||| |||||||||| |||||||||||||  ||||| ||||||| ||| |||||||||||||    
T  7217931 tcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacccttttttatctcttattttaatgtttttgcca 7217832  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
      |||||||||||||||| | | | ||||| | ||||||||| ||| |||||||||||||||||||||    
T  7217831 cgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctct 7217764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 167
Target Start/End: Complemental strand, 46192522 - 46192358
Alignment:
Q  3 atacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatat 102  Q
    |||||| ||||||||||||||||||||  ||||  |||| | | |||| | |||| || |||||   |||| ||||||||||||||||||||||||| ||    
T  46192522 atacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacat 46192423  T
Q  103 gtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
    ||||||||||||||||| | ||||||| | ||||||||| ||| || || |||||||||||||||    
T  46192422 gtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctct 46192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 35545078 - 35544911
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttg-agtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    ||||||||  ||||||||||| |||||| ||||||  ||||  |||||||||| |||||||||||||   |||| || ||||||||||||||||||||||    
T  35545078 tcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcacccctttttatatcttctttcaatgtttttgcca 35544979  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
      | |||||||||| ||||||| ||||| | | ||| ||||| ||||||||| |||||||||||||||    
T  35544978 cgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctct 35544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 45829352 - 45829448
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||||| | ||||| | | |||| |||| ||  ||||| ||||||||||||||    
T  45829352 tttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 51038859 - 51038810
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtgg 119  Q
    ||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  51038859 ttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgg 51038810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 167
Target Start/End: Original strand, 52191305 - 52191392
Alignment:
Q  80 ttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
    ||||||||||||||||| || ||||||||| | ||||||| | | ||| | ||||||||||| ||| ||||  ||||||||| |||||    
T  52191305 ttctttcaatgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctct 52191392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 6884 - 6722
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    ||||||||||||||||||||||| ||||||||||||| |||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  6884 tcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 6785  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataaga 162  Q
      |||||||||||||||||| | ||||||| | ||||||||| ||| ||||| ||||||||||    
T  6784 cgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 26972228 - 26972405
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||||| |||||||||||||  |||||||||||| ||||||||||||||||||    
T  26972228 tcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctctcctttcaatgtttttgcca 26972327  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctctataatttaata 178  Q
      ||||| |||||||||||| | ||||||| | ||||||||| ||| ||||| |||||||||||||||| |||||||||    
T  26972328 cgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctcta-aatttaata 26972405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 34108592 - 34108426
Alignment:
Q  1 tcatacacttcttatgtacac-cccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||||| ||    
T  34108592 tcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgtca 34108493  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||||||||| ||||||| | ||||||| | |||| |||| ||| ||||| ||||||||||||||    
T  34108492 tatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 36346590 - 36346756
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| |||||||||||||| ||||| ||||||  |||| |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||    
T  36346590 tcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacctttt-tcatctcttctttcaatgtttttgcca 36346688  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
      |||||||||||||| ||| | ||||||| | ||||||||| |||||||||||||||||||||||||    
T  36346689 cgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 36346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 30887865 - 30887700
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    ||||||||||||||| ||||||||||||||||| |  |||| |||||||||| |||||||||||||  |||||||||||||| |||||||||||||| |     
T  30887865 tcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgctac 30887766  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
     |||||||||||| ||||| | ||||||  | ||||||||| ||||| ||| ||||||||||||||    
T  30887765 gtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 45782687 - 45782851
Alignment:
Q  3 atacacttcttatgtacac-cccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccata 101  Q
    |||||||| |||||||||| ||||||| ||||||  |||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||| ||      
T  45782687 atacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacg 45782786  T
Q  102 tgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||||||||||||||| | ||||| ||| ||||||||| ||  ||||| ||||||||||||||    
T  45782787 tgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 31148455 - 31148296
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| ||||||  ||||||||| | |||||   |||| |||||||||| |||||||||||||   |||||||||||||||||||||||||||||||    
T  31148455 tcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgccat 31148356  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataa 160  Q
     |||||||||||||||||| | ||||||| | ||||||||| ||||||||| ||||||||    
T  31148355 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 7700502 - 7700672
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| |||||| ||||||  ||||| ||| ||  |||| |||||||||||||||||||||||   ||||| |||||||||||||||||||||||||    
T  7700502 tcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgcca 7700601  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctctata 170  Q
      |||||||||||||||||| | ||||||| | ||||||| | ||| ||||||||||||||||||||||||    
T  7700602 cgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctctata 7700672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 28307520 - 28307686
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| ||||||||||||||| || | ||| ||  |||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  28307520 tcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 28307619  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||| ||||||||||||| | ||||||| | ||||||||| ||| | ||||||||||||||||||    
T  28307620 cgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 34828230 - 34828069
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    ||||||||  |||||| ||||||||| | ||||||  |||| |||||||||| ||||||||||||    ||||||||||||||||||||||||||||||     
T  34828230 tcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcacttttcatctcttctttcaatgtttttgccac 34828131  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagag 163  Q
     |||||||||||||||||||| ||||||||| |||| |||||||| ||||| |||||||||||    
T  34828130 gtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 7699908 - 7700074
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| |||||| ||||||  ||||| ||| ||  |||| |||||||||||||||||||||||   ||||| |||||||||||||||||||||||||    
T  7699908 tcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgcca 7700007  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||||||||||| | ||||||| | ||||||| | ||| ||||||||||||||||||||    
T  7700008 cgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 7700106 - 7700272
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| |||||| ||||||  ||||| ||| ||  |||| |||||||||||||||||||||||   ||||| |||||||||||||||||||||||||    
T  7700106 tcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgcca 7700205  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||||||||||| | ||||||| | ||||||| | ||| ||||||||||||||||||||    
T  7700206 cgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 7700304 - 7700470
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| |||||| ||||||  ||||| ||| ||  |||| |||||||||||||||||||||||   ||||| |||||||||||||||||||||||||    
T  7700304 tcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgcca 7700403  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||||||||||| | ||||||| | ||||||| | ||| ||||||||||||||||||||    
T  7700404 cgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 166
Target Start/End: Original strand, 5811202 - 5811354
Alignment:
Q  14 atgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgt 113  Q
    ||||||||| ||||| ||||||  |||| |||||||| | |||| ||| ||||   |||||||||||||||||||||||||||||| |||||||||||||    
T  5811202 atgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgt 5811301  T
Q  114 gtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||| |  |||||||| ||||||||| | | |||||||||||||| |||||    
T  5811302 gtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctc 5811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 23980227 - 23980137
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataa 160  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| | ||||||||| | | ||||||||||||||    
T  23980227 ttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 42220988 - 42221154
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttg-agtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    ||||||||  ||||||||||| |||||| ||||||  ||||  |||||||| | |||||||||||||   |||| || ||||||||||||||||||||||    
T  42220988 tcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttttatatcttctttcaatgtttttgcca 42221087  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||||||||||| | |||||   | ||||||||| ||| ||||| ||||||||||||||    
T  42221088 cgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 13108299 - 13108148
Alignment:
Q  14 atgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgt 113  Q
    ||||||||| ||||| ||||||  |||| |||||||| | |||| ||| ||||   ||| ||||||||||||||| |||||||||| |||||||||||||    
T  13108299 atgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt-catctcttctttcaacgtttttgccacatgtcacaaatgt 13108201  T
Q  114 gtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||| | ||||||| | |||||| || ||| |||||||||||||| |||||    
T  13108200 gtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 15020421 - 15020282
Alignment:
Q  24 catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatct 123  Q
    ||||| ||||||| |||| |||||||| | |||||||| ||||   ||| | |||||||||||||||||||||||||||||||||||||  ||||| | |    
T  15020421 catgtgttagggatattttagtaatttcacatcatatcttcaccccttt-cgtctcttctttcaatgtttttgccatatgtcacaaatg--tgtgggtgt 15020325  T
Q  124 aaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||| | ||||||||| | | |||||||||||||| |||||    
T  15020324 aaaaggttgtatgccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 21807350 - 21807509
Alignment:
Q  3 atacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatat 102  Q
    |||||||||| || ||||||||| || ||||||  |||| |||||||| | || | |||||||    |||||||||||||||||||| ||||||||| ||    
T  21807350 atacacttctcatatacaccccacgtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacat 21807449  T
Q  103 gtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataaga 162  Q
     |||||||| ||||||| | ||||| | | ||||||| | ||| ||||| ||||||||||    
T  21807450 atcacaaatttgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 29953597 - 29953663
Alignment:
Q  1 tcatacacttcttatgtacacc-ccatgtattagggacatttgagtaattttatatcatatcatcac 66  Q
    |||||||||||||||||| ||  |||||||||||||| ||||||||||||||| |||||||||||||    
T  29953597 tcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcac 29953663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 38321102 - 38321014
Alignment:
Q  73 tcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataag 161  Q
    |||| |||||||||||||||||||||| ||||||||| ||| ||||| | | |||   | ||||||||| ||||||||| |||||||||    
T  38321102 tcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 20086691 - 20086782
Alignment:
Q  38 atttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaagg 129  Q
    |||| |||||||| | |||| ||||||||   |||| ||||||||||| ||||||||||||| ||||| ||||||| ||||| | |||||||    
T  20086691 attttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaagg 20086782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 36957525 - 36957447
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatg 148  Q
    ||||||||||||||| |||| |||||| ||  |||||||||| ||| ||||| ||||||| | ||||||||| ||||||    
T  36957525 ttttcatctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaagatg 36957447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 46475120 - 46475075
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgt 115  Q
    |||||||||||||||||||||||||||  | |||||||||||||||    
T  46475120 ttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgt 46475075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 42950109 - 42950157
Alignment:
Q  71 tttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtgg 119  Q
    ||||||||||| ||||||||| ||||||| || ||||||||||||||||    
T  42950109 tttcatctcttttttcaatgtatttgccacatatcacaaatgtgtgtgg 42950157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 34749923 - 34750089
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  34749923 tcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 34750022  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||| ||||||| | ||||||| | ||||||||| ||| ||||| ||||||||||||||    
T  34750023 cgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 22894846 - 22894680
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||| || ||||||||||||   |||||||||||||||||||||||||||||||    
T  22894846 tcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgtttttgcca 22894747  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||||||||||| | ||||||| | ||||||||| ||| ||||| ||||||||||||||    
T  22894746 cgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 22894680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 21559727 - 21559560
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| ||||||||||||||| |||| ||||||  |||| |||||||||| |||||||||| ||  ||||||||||||||||||||| |||||||||    
T  21559727 tcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattaccctttttcatctcttctttcaatatttttgcca 21559628  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
      |||||||||||||||||| | ||||||| | ||||||||| |||||||||||||||||||||||||    
T  21559627 cgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 21559560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 36370363 - 36370530
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||| |||| ||||||| ||||||||||||  ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||| ||    
T  36370363 tcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtca 36370462  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     ||||||||||||||||||| | ||||| | | |||| |||| ||| ||||| |||||||||||||||    
T  36370463 catgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctct 36370530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 46111969 - 46112136
Alignment:
Q  1 tcatacacttcttatgtaca-ccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| | |||| |||| |||||||||||||||  |||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  46111969 tcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 46112068  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     ||||||||||||||||||||| ||||| | | |||| |||| ||||||||| |||||||||| ||||    
T  46112069 catgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataagaactct 46112136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 44000155 - 43999986
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||| |||||||| ||| |||||||||| |  ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  44000155 tcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 44000056  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctctat 169  Q
      |||||||||||||||||| | ||||| | | |||| |||| ||| ||||| |||||||||||||||||    
T  44000055 cgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctctat 43999986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 51339809 - 51339979
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| ||||||||||||  ||||| |||| |  |||| |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||     
T  51339809 tcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccac 51339908  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctctataatt 173  Q
     |||||||||  ||||||| | ||||||||| ||||||||| ||| ||||||||||||||||||||| |||||    
T  51339909 gtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctctttaatt 51339979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 36749572 - 36749405
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||| |||||||||||| |||||||||| |  ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  36749572 tcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 36749473  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
      |||||||||||||||||| | ||||| | | |||| || | ||| ||||| |||||||||||||||    
T  36749472 cgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctct 36749405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 48200851 - 48200688
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||| ||||||||||||| |||||||| ||  ||||||||||||||| ||||||||||||   ||||||||||||||||||||| |||||||||    
T  48200851 tcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatatttttgcca 48200752  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagag 163  Q
      |||||||||| | ||||||| ||||| | | ||||||||| |||||| || ||| |||||||    
T  48200751 cgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 29460756 - 29460660
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||||| | ||||||||| ||| ||||| ||||||||||||||    
T  29460756 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 29471608 - 29471512
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||||| | ||||||||| ||| ||||| ||||||||||||||    
T  29471608 ttttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 38231389 - 38231293
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||| | ||||||| | ||||||||| ||| ||||| ||||||||||||||    
T  38231389 ttttcatatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 30735521 - 30735687
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttg-agtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    ||||||||  ||||||||||| |||||| ||||||  ||||  |||||||| | |||||||||||||  ||||| || ||||||||||||||||||||||    
T  30735521 tcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccttttt-atatcttctttcaatgtttttgcca 30735619  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
      ||||||| |||||||||| | ||||||| | ||||||| | ||| ||||| || ||||||||||||    
T  30735620 cgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctct 30735687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 39467140 - 39467294
Alignment:
Q  14 atgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgt 113  Q
    ||||||||| ||||| ||| ||| |||| |||||||| |||||| ||| ||||   |||||||||||||||||||| |||||| || ||||||||||| |    
T  39467140 atgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcaccccttttcatctcttctttcaatatttttggcacatgtcacaaatat 39467239  T
Q  114 gtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctcta 168  Q
    |||||| | ||||||| | |||| || | | | ||||||||| |||| |||||||    
T  39467240 gtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctcta 39467294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 20856182 - 20856334
Alignment:
Q  3 atacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatat 102  Q
    |||||| ||| ||||||||||||||| | ||||  |||| ||||||||||||||| |||||||   ||||| || |||| ||||||||||||||||| ||    
T  20856182 atacacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatccttttt-atatctt-tttcaatgtttttgccacat 20856278  T
Q  103 gtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtat 158  Q
    ||||||||||||| ||| | ||||||| | ||||||||| ||  ||||| ||||||    
T  20856279 gtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 50966255 - 50966130
Alignment:
Q  38 atttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgc 137  Q
    |||| |||||||||| || ||||||||    ||||||||||||||||||||| |||||| ||  |||||||||||||  | ||| ||||||| | |||||    
T  50966255 attttagtaattttacattatatcatcc---tttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgc 50966159  T
Q  138 cacccaagatggtttatgtataagagctct 167  Q
    |||| ||||| ||| |||||||||||||||    
T  50966158 cacctaagat-gttcatgtataagagctct 50966130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 167
Target Start/End: Complemental strand, 51069390 - 51069265
Alignment:
Q  38 atttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgc 137  Q
    |||| |||||||||| || ||||||||    ||||||||||||||||||||| |||||| ||  |||||||||||||  | ||| ||||||| | |||||    
T  51069390 attttagtaattttacattatatcatcc---tttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatgc 51069294  T
Q  138 cacccaagatggtttatgtataagagctct 167  Q
    |||| ||||| ||| |||||||||||||||    
T  51069293 cacctaagat-gttcatgtataagagctct 51069265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 39072368 - 39072468
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctctat 169  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||| ||||| | ||||||| | |||| || | ||| || || |||||||| ||||||||    
T  39072368 ttttcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctctat 39072467  T
Q  170 a 170  Q
    |    
T  39072468 a 39072468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29472974 - 29472910
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatca 65  Q
    ||||||||  |||||| ||||||||||| ||||||  |||| |||||||||| ||||||||||||    
T  29472974 tcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatca 29472910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 45569343 - 45569391
Alignment:
Q  73 tcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggat 121  Q
    |||||||||||||||| ||||||||||||| | |||| |||| ||||||    
T  45569343 tcatctcttctttcaacgtttttgccatatattacaattgtgcgtggat 45569391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 53638228 - 53638160
Alignment:
Q  73 tcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacc 141  Q
    |||||||||||||| |||||||| ||| ||||||| | ||||||||| | | ||||| | |||||||||    
T  53638228 tcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgtatgccacc 53638160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 33732734 - 33732569
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| ||||||||||||||||| ||||||||  |||| |||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||     
T  33732734 tcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccac 33732635  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    ||||||||||||||||||| | ||||||| | ||||||||| ||| ||||| ||||||||||||||    
T  33732634 atgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 14573160 - 14572994
Alignment:
Q  2 catacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    ||||||| ||||||||||||||| |||| ||||||  |||| |||||||||| |||||||||||||  |||| |||||||||||||||||||||||| |     
T  14573160 catacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctac 14573061  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     |||||||||||||||||||| ||||||| |  |||||||| ||| |||||||||||||||||||||    
T  14573060 gtgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtataagagctct 14572994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 16089986 - 16089821
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| ||||||||||||||||||| ||||||  |||| |||||||||| ||||||||| ||| |||||| |||||||||||||||||||||||||     
T  16089986 tcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccacctttttt-atctcttctttcaatgtttttgccac 16089888  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     |||||||||||||||||| | ||||||| | ||||||||  ||| ||||| |||||||||||||||    
T  16089887 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctct 16089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 44958279 - 44958116
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| ||||||||| |||| ||||| ||||||  |||| |||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||    
T  44958279 tcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttttttatctcttctttcaatgtttttgcca 44958180  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagag 163  Q
     ||||||||||||||||||| | ||||||| | ||||||||| ||| ||||| |||||||||||    
T  44958179 catgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 37498890 - 37499058
Alignment:
Q  3 atacacttcttatgtaca-ccccatgtattagggacatttgagtaattttatatcatatcatcacatt--ttttcatctcttctttcaatgtttttgcca 99  Q
    |||||| ||||||||||| |||||||| ||||||  |||| |||||||||| |||||||||||||  |  ||||||||||||||||||||||||||||||    
T  37498890 atacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccctctttttcatctcttctttcaatgtttttgcca 37498989  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctcta 168  Q
     ||||||||||||||||||  | ||||||||| |||||||   ||||||||| || |||||||||||||    
T  37498990 catgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctcta 37499058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 167
Target Start/End: Original strand, 37914265 - 37914428
Alignment:
Q  3 atacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatat 102  Q
    |||||| ||||||||||||||||||||  ||||  |||| | | |||| | |||| || |||||   |||| ||||||||||||||||||||||||| ||    
T  37914265 atacacctcttatgtacaccccatgtaccagggt-attttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacat 37914363  T
Q  103 gtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
    ||||||||||||||||||| ||||||| | ||||||||| ||| |||||||||||||| ||||||    
T  37914364 gtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctct 37914428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 36315724 - 36315561
Alignment:
Q  3 atacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatat 102  Q
    |||||| ||||||||||||| ||||| | ||||  |||| | | |||| | |||| || ||||| | |||| ||||||||||||||||||||||||| ||    
T  36315724 atacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctctttttatctcttctttcaatgtttttgccacat 36315625  T
Q  103 gtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    ||||||||||||||||| | ||||||| | ||||||||| ||| ||||| ||||||||||||||    
T  36315624 gtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 3830923 - 3831087
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| ||||||||||||||||||| ||||||  || | |||||||||| |||| || |||||   ||||||||||||||||||||||||||||||     
T  3830923 tcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatctcttctttcaatgtttttgccac 3831022  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     |||||||||  ||||||| | ||||||| | |||| |||| ||| ||||| ||||||||| |||||    
T  3831023 gtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctct 3831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 24137187 - 24137236
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtgg 119  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  24137187 ttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgg 24137236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 6376333 - 6376424
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||||||||||||||||||     |||| ||||||||||||||||||| | ||||||| | ||||||||| | | |||||||||||||| |||||    
T  6376333 ttttcatctcttctttcaatg-----gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 41188932 - 41188806
Alignment:
Q  3 atacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatat 102  Q
    |||||| ||| ||||||| | ||||| | || || |||| |||||||||| |||| |||||||    ||||||| || | ||||||||||||||||| ||    
T  41188932 atacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatcccttttcatatcatttttcaatgtttttgccacat 41188833  T
Q  103 gtcacaaatgtgtgtggatctaaaagg 129  Q
    |||| |||| ||| | ||| |||||||    
T  41188832 gtcataaatatgtatagatataaaagg 41188806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 15345685 - 15345849
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||     
T  15345685 tcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcaccttttttcatcttttctttcaatgtttttgccac 15345784  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     |||||||||  ||| ||| | ||||||  ||||||||||| ||| ||||| |||||||||||||||    
T  15345785 gtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctct 15345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 3986931 - 3987097
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    ||||||| || ||||||| ||||||||||||| ||  ||||||||||||||| ||||||| ||||    ||||||||||||||||||||||||||||||     
T  3986931 tcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatcccttttcatctcttctttcaatgtttttgccac 3987030  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     |||||||||||||||||| | ||||||| | ||||||||| ||| ||||| |||||||||||||||    
T  3987031 gtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 3987097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 13697733 - 13697569
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    ||||||| | |||||||||||||||||| |||| || |||| ||||||||||||||||||||||||   |||||||||||||||||||||||||| |||     
T  13697733 tcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgttttcatctcttctttcaatgtttttaccac 13697634  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
     | |||||||||||| ||| | ||||||| |  ||| || | ||||||||||||||||||||||||    
T  13697633 gtatcacaaatgtgtatgg-tgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 14023086 - 14022934
Alignment:
Q  14 atgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgt 113  Q
    ||||||||| ||||| ||||||  |||| |||||||| | |||| ||| ||||   || ||||||||||||||||||||||||||| |||||||||||||    
T  14023086 atgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtcatctcttctttcaatgtttttgccacatgtcacaaatgt 14022987  T
Q  114 gtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||| | ||||||| | ||||||||| ||| |||||||||||||| |||||    
T  14022986 gtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 3118072 - 3118239
Alignment:
Q  1 tcatacacttcttatgtacac-cccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||  |||||||||||| ||||||||||||||  |||| |||||||||| ||||| ||| |||  ||||| |||| ||||||||||||||||||||    
T  3118072 tcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacccttttttatctattctttcaatgtttttgcca 3118171  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
      |||||||||||||||||  | ||||||| | ||||||||| ||| ||||| || ||||||||||||    
T  3118172 cgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctct 3118239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 24208607 - 24208444
Alignment:
Q  3 atacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatat 102  Q
    |||||| ||| || |||||| ||||| ||||||  |||| |||||||| | |||| ||| ||||  ||||||||||||||||||||||||||||||| ||    
T  24208607 atacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccctttttcatctcttctttcaatgtttttgccacat 24208508  T
Q  103 gtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
     |||||||||||||||| | |||||   | ||| ||||| | |||||||||||||||| |||||    
T  24208507 atcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 39371093 - 39370927
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||| ||    
T  39371093 tcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttggca 39370994  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||||||||||| | ||||||| | ||||||| | ||| ||||| ||||||||||||||    
T  39370993 cgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 13347294 - 13347125
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    ||||||||||||||||||||||| ||||||||||||  |||||||||||| || |||||||||||||  |||||||||| ||||||||||||||||||||    
T  13347294 tcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactctttttcatctattctttcaatgtttttgcca 13347195  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctctat 169  Q
      |||||||||||||||||| | ||||||| | ||||||||| ||| ||||| |||||||| ||||||||    
T  13347194 cgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctctat 13347125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 9408064 - 9408235
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||||||||||||||||| || ||||||||  ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  9408064 tcatacacttcttatgtacacccccatatattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 9408163  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctctataa 171  Q
      |||||||||||||||||  | |||||||   |||| ||||  || ||||| |||||||||||||||||||    
T  9408164 cgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtataagagctctataa 9408235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 2237442 - 2237276
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||||||||||||||||| | |||||||||  ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  2237442 tcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 2237343  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||| ||||||| | ||||||| | |||| |||| ||| ||||| |||||||| |||||    
T  2237342 cgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 40887967 - 40888134
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| ||||||||||||||| || |||||| |  |||| |||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||    
T  40887967 tcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgcca 40888066  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
      |||||||||||||||||| | ||||||  | ||||||||| ||| |||||||||||||||||||||    
T  40888067 cgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctct 40888134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 1815655 - 1815808
Alignment:
Q  14 atgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgt 113  Q
    |||||||||| |||| ||||||  |||| |||||||||| |||||||||||||   ||||||||||||||||||||||||||||||  |||||||||| |    
T  1815655 atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatat 1815754  T
Q  114 gtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
    |||||||| ||||||| | |||| |||| ||||||||| |||||||||||||||    
T  1815755 gtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctct 1815808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 14831710 - 14831559
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||||||||||||||||||| | |||||||||  |||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||||||    
T  14831710 tcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgcca 14831611  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtt 151  Q
      | |||||||||||||||| | ||||||| | ||||||||| ||| |||||    
T  14831610 cgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtt 14831559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 27553399 - 27553565
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| |||||||||||||| |||| |||||   |||| |||||||||| |||| || |||||  |||||| ||||||||||||||||||||||||     
T  27553399 tcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttttcttctcttctttcaatgtttttgccac 27553498  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     |||||||||||||||||| | ||||| | ||||||||||| || |||||| |||||||||||||||    
T  27553499 gtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctct 27553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 4300582 - 4300735
Alignment:
Q  14 atgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgt 113  Q
    ||||||||| ||||| ||||||| |||| | |||||| | |||| |||| |||  ||||| ||||||| ||||||||||||||||||||||||||||| |    
T  4300582 atgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccattttttatctcttatttcaatgtttttgccatatgtcacaaatat 4300681  T
Q  114 gtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
    |||||| | |||||||||||||| |||| || |||||| |||||||||||||||    
T  4300682 gtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctct 4300735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 31800723 - 31800589
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccat 100  Q
    |||||||| |||| |||||||||||| | ||||||  |||| |||||||||| |||||||||||||   ||||||||| |||||||||| |||||||||     
T  31800723 tcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcaccccttttcatcttttctttcaatatttttgccac 31800624  T
Q  101 atgtcacaaatgtgtgtggatctaaaaggatatat 135  Q
     ||||| |||||||||||| | |||||||||||||    
T  31800623 gtgtcataaatgtgtgtgggtgtaaaaggatatat 31800589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 168
Target Start/End: Complemental strand, 17225461 - 17225317
Alignment:
Q  22 cccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggat 121  Q
    ||||||||| ||||  |||| |||||||| | |||| |||||||| | ||||||||||||||||||||||||||| || ||||||||||||||||||| |    
T  17225461 cccatgtatcaggggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggt 17225362  T
Q  122 ctaaaaggatatatgccacccaagatggtttatgtataagagctcta 168  Q
     ||||||    ||||||||| ||  ||||| ||||||||||||||||    
T  17225361 gtaaaag--agtatgccacctaaagtggttcatgtataagagctcta 17225317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 33404530 - 33404627
Alignment:
Q  69 tttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||| | ||||||  | |||| |||| ||| ||||| ||||||||||||||    
T  33404530 tttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctc 33404627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 19596162 - 19596258
Alignment:
Q  70 ttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||| ||||||||||||||||||||||| |||||||||||||| |||||| ||||| | | ||||||||| ||| ||||| |||||||| |||||    
T  19596162 ttttcacctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 19124535 - 19124615
Alignment:
Q  38 atttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtgg 119  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||| |||||||||    
T  19124535 attttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgg 19124615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 42683765 - 42683670
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgttttt 95  Q
    |||||||| ||||||||||||||| || ||||||||  |||| |||||||||| ||||||||| ||   |||||||||||||||||||||||||||    
T  42683765 tcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttttcatctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 12164339 - 12164254
Alignment:
Q  78 tcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagag 163  Q
    |||||||||||||||||||||| ||| ||||| ||||||||  | | |||| || | ||||||| ||||||||| |||||||||||    
T  12164339 tcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataagag 12164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 41003879 - 41004015
Alignment:
Q  3 atacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatat 102  Q
    |||||| ||| ||||||||||||| | | ||||| |||| |||||||||| |||| |||||||    |||| || |||| ||||||| ||||||||| ||    
T  41003879 atacacctctcatgtacaccccatatgtcagggatattt-agtaattttacatcacatcatcatccctttttatatctt-tttcaatatttttgccacat 41003976  T
Q  103 gtcacaaatgtgtgtggatctaaaaggatatatgccacc 141  Q
    |||| |||||||| ||  | ||||||| | |||||||||    
T  41003977 gtcataaatgtgtatgagtgtaaaagggtgtatgccacc 41004015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 34307163 - 34307329
Alignment:
Q  1 tcatacacttcttatgtacac-cccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| |||||||||||| ||||||| ||||||  |||| |||||||||| |||||||||||||  |||||||| ||||||||||||||||||||||    
T  34307163 tcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttttcatatcttctttcaatgtttttgcca 34307262  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||||||||||||| ||||||| | ||||||||| ||| ||||||||||||||||||||    
T  34307263 cgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctc 34307329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 2509190 - 2509028
Alignment:
Q  1 tcatacacttcttatgtacaccc-catgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| |||||||||||||| ||||||||||||| |||| |||||||||| ||||||||| |||  |||||||||||||||||||||||||||||||    
T  2509190 tcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgcca 2509091  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataaga 162  Q
      |||||||||||||||||| | ||||||||| |||| |||| ||| ||||| ||||||||||    
T  2509090 cgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 39249888 - 39250057
Alignment:
Q  1 tcatacacttcttatgtacacccc-atgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    |||||||| ||||||||||||||| |||||||||||  |||| |||||||||| || |||||| ||   |||||||||||||||||||||||||||||||    
T  39249888 tcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttcatctcttctttcaatgtttttgcca 39249987  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctctat 169  Q
      |||||||||||||| ||| | ||||||| | ||||||||| ||||||||| |||||||||||||||||    
T  39249988 cgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctctat 39250057  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 46901760 - 46901926
Alignment:
Q  1 tcatacacttcttatgtacacc-ccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgcca 99  Q
    ||||||| |||||||||||||| |||||||| |||   ||||||||||||||| |||||||||||||  ||||||||||||||||| |||||||||||||    
T  46901760 tcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttttcatctcttcttttaatgtttttgcca 46901859  T
Q  100 tatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
      |||||||||| ||||| | | ||||| | | |||| |||| ||| ||||| ||||||||||||||    
T  46901860 cgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 19258711 - 19258864
Alignment:
Q  14 atgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgt 113  Q
    ||||||||||||||| ||||| | |||| | |||||| | |||| |||| |||   |||||||||||| ||||||||||||||||| ||||||||||| |    
T  19258711 atgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcatctcttttttcaatgtttttgccacatgtcacaaatat 19258810  T
Q  114 gtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctct 167  Q
     ||||| | ||||| | | |||||||||  ||||||||||||||||| ||||||    
T  19258811 atgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctct 19258864  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 28647505 - 28647353
Alignment:
Q  14 atgtacaccccatgtattagggacatttgagtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgt 113  Q
    ||||||| ||||||| ||||| | |||| | |||||| | |||| |||| |||   ||||||||| |||||||||||||||||||| || |||||||| |    
T  28647505 atgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcatctattctttcaatgtttttgccaaatatcacaaatat 28647406  T
Q  114 gtgtggatctaaaaggatatatgccacccaagatggtttatgtataagagctc 166  Q
    |||||| | ||||| ||| ||||| |||  || ||||| |||||||| |||||    
T  28647405 gtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 29099939 - 29099821
Alignment:
Q  43 agtaattttatatcatatcatcacattttttcatctcttctttcaatgtttttgccatatgtcacaaatgtgtgtggatctaaaaggatatatgccaccc 142  Q
    |||||||| | |||| ||||||||   |||| || |||| |||||||||||||| || |||||||||||||||||||| |  ||||  | ||||||| |     
T  29099939 agtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttgtcacatgtcacaaatgtgtgtgga-cgtaaagagtgtatgccatct 29099841  T
Q  143 aagatggtttatgtataaga 162  Q
    ||| ||||||||||||||||    
T  29099840 aaggtggtttatgtataaga 29099821  T

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Target: scaffold0043 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 87188 - 87350
Alignment:
Q  1 tcatacacttcttatgtacaccccatgtattagggacatttgagtaattttatatcatat--catcacattttttcatctcttctttcaatgtttttgcc 98  Q
    |||||||| | ||||||||||||||||| ||||||  |||| ||||||||||||| ||||  ||||||  ||||||||||||||||||||||||||||||    
T  87188 tcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatttttcatctcttctttcaatgtttttgcc 87287  T
Q  99 atatgtcacaaatgtgtgtggatctaaaaggatatatgccacccaagatggtttatgtataaga 162  Q
    |  |||||||||||||||||| | || |||| | ||||||||| ||| ||||| ||||||||||    
T  87288 acgtgtcacaaatgtgtgtgg-tgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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