View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8486_low_2 (Length: 582)
Name: NF8486_low_2
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8486_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 228 - 561
Target Start/End: Complemental strand, 38887541 - 38887208
Alignment:
| Q |
228 |
atgtataattttttccttacttatccctcaccattagttttcagatgaagcagttacttttcccctcttaaactactgtttgttattaacttatttcttc |
327 |
Q |
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| T |
38887541 |
atgtataattttttccttacttatccctcaccattagttttcagatgaagcagttacttttcccctcttaaactactgtttgttattaacttatttcttc |
38887442 |
T |
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| Q |
328 |
aaattgtaattaaggatccatgcatcacaatattttctttcaaggaatgaaagaagtaccatcatggacaggaaaatgtgaaatcacttgagcattgttt |
427 |
Q |
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| T |
38887441 |
aaattgtaattaaggatccatgcatcacaatattttctttcaaggaatgaaagaagtaccatcatggacaggaaaatgtgaaatcacttgagcattgttt |
38887342 |
T |
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| Q |
428 |
gatctatgttgttccccttgatcaaaagatatgaaagaagtactatagtattcaacaaatccactggttttatgattaaccacctcatgcacaccttgat |
527 |
Q |
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| T |
38887341 |
gatctatgttgttccccttgatcaaaagatatgaaagaagtactatagtattcaacaaatccactggttttatgattaaccacctcatgcacaccttgat |
38887242 |
T |
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| Q |
528 |
caccatttagttttttatcagaaaatgatgccga |
561 |
Q |
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| T |
38887241 |
caccatttagttttttatcagaaaatgatgccga |
38887208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 38887750 - 38887603
Alignment:
| Q |
17 |
agacagaattgtagttcaagactgcttaaggtaaaagtcatgtttgtatacagtttgatagttaatatttacccaagtataaaggcatcaagcctttgtt |
116 |
Q |
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| T |
38887750 |
agacagaattgtagttcaagactgcttaaggtaaaagtcatgtttgtatacagtttgatagttaatatttacccaagtataaaggcatcaagcctttgtt |
38887651 |
T |
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| Q |
117 |
atgtatgttttggtgtcattgtacaaagcatgagaccagctacacttc |
164 |
Q |
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| T |
38887650 |
atgtatgttttggtgtcattgtacaaagcatgagaccagctacacttc |
38887603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 463
Target Start/End: Complemental strand, 30506218 - 30506154
Alignment:
| Q |
399 |
gaaaatgtgaaatcacttgagcattgtttgatctatgttgttccccttgatcaaaagatatgaaa |
463 |
Q |
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| T |
30506218 |
gaaaatgtgaaattacttgagcattgctagacctatgttggttcccttgatcaaatgatatgaaa |
30506154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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