View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8486_low_3 (Length: 431)
Name: NF8486_low_3
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8486_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 34 - 425
Target Start/End: Original strand, 40522208 - 40522599
Alignment:
| Q |
34 |
tcttaacttttgtagagattatactcaattatgtgtagttgccaagagtgtaacttcagaaagaggagttgggattggcaagtttcgacagaggggacaa |
133 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40522208 |
tcttaacttgtgtagagcttatactcaattatgtgtagttgccaagagtgtaacttcagaaagaggagttgggattggcaagtttcgacagaggggacaa |
40522307 |
T |
|
| Q |
134 |
gagaggtttaacctaaaccatgcagcaatacagtccttatgaaaaaagtgaccacaatcaggtaagaaacgcaaccactctgaatctttataatctccca |
233 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40522308 |
gagaggtttgacctaaaccatgcagcaatacagtccttatgaaaaaagtgaccacaatcaggtaagaaacgcaaccactctaaatctttataatctccca |
40522407 |
T |
|
| Q |
234 |
aacaaattgagcaaatgagtgatgttgaatcatcaggcttatgaaacttgacttgggagtacaacaaaatggggtaactgttcggattaacgtctctttc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40522408 |
aacaaattgagcaaatgagtgatgttgaatcatcaggcttatgaaacttgacttgggagtacaacaaaatggggtaactgttcggattaacgtctctttc |
40522507 |
T |
|
| Q |
334 |
ttcttcacatacttcaatattcacttcagtagtatgatctgtgttagaattgatgccactagattgcagcctgttttgccaataacacgaaa |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
40522508 |
ttcttcacatacttcaatattcacttcagtagtatgatctgtgttagaattgatgccactagattgcatcctgttttgccaataacatgaaa |
40522599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 101 - 312
Target Start/End: Original strand, 40526184 - 40526395
Alignment:
| Q |
101 |
gttgggattggcaagtttcgacagaggggacaagagaggtttaacctaaaccatgcagcaatacagtccttatgaaaaaagtgaccacaatcaggtaaga |
200 |
Q |
| |
|
||||||| |||| |||||||||| || ||||| |||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40526184 |
gttgggagtggcgagtttcgacatagaggacatgagaggtttagcctgaaccatgtagcaatacagtccttatgaaaaaagtgaccacaatcaggtaaga |
40526283 |
T |
|
| Q |
201 |
aacgcaaccactctgaatctttataatctcccaaacaaattgagcaaatgagtgatgttgaatcatcaggcttatgaaacttgacttgggagtacaacaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||| ||| |
|
|
| T |
40526284 |
aacgcaaccactctgaatctttataatctcccaaacaaattgagcaaatgagtgatgttgaatcagccttatgatgaaacttgacttgtgagtacagcaa |
40526383 |
T |
|
| Q |
301 |
aatggggtaact |
312 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
40526384 |
aacggggtaact |
40526395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University