View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8486_low_4 (Length: 399)
Name: NF8486_low_4
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8486_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 31787148 - 31787068
Alignment:
| Q |
16 |
gaaagagggaaagaaaatacttgtttgggaaattattgggttggtttgaaattgcatgcaactgaatggtttggttactta |
96 |
Q |
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| T |
31787148 |
gaaagagggaaagaaaatacttgtttgggaaattattgggttggtttgaaattgcatgcaactgaatggtttggttactta |
31787068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 112 - 276
Target Start/End: Original strand, 33648771 - 33648930
Alignment:
| Q |
112 |
tttggtaaaattgttagactcattaaaatatttatattttttcataattttatgaagaaaatgtcacccacgttcaatgtgaaaaagacagatattgtga |
211 |
Q |
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| T |
33648771 |
tttggtaaaattgttaccctcatcaaactatttatatttt-tcataattttatgaagaaaacgtcacccacattcaatgtgaaattcaaag-tatgacga |
33648868 |
T |
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| Q |
212 |
ctttacattaataggcattaatgaatcactacccacccacaaataaatgaaaagattaatggggt |
276 |
Q |
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| T |
33648869 |
ttttacattaataggcattaatgaattagcactcaccccca---aaatgaaaagattaattgggt |
33648930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 31783584 - 31783528
Alignment:
| Q |
42 |
gggaaattattgggttggtttgaaattgca--tgcaactgaatggtttggttactta |
96 |
Q |
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| T |
31783584 |
gggaagttattgggttggtttgaaattggaattgtaactgaatggtttggttactta |
31783528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 15074696 - 15074756
Alignment:
| Q |
281 |
gtggaagaggttagagatgaagatggtggggagaatgttagccatgggattagacttgaaa |
341 |
Q |
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| T |
15074696 |
gtggaagcggttggagatgaagatggtagggagaatgttagccatgagattagacttgaaa |
15074756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 21273888 - 21273948
Alignment:
| Q |
281 |
gtggaagaggttagagatgaagatggtggggagaatgttagccatgggattagacttgaaa |
341 |
Q |
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| T |
21273888 |
gtggaagcggttggagatgaagatggtagggagaatgttagccatcagattagacttgaaa |
21273948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 32806964 - 32807030
Alignment:
| Q |
25 |
aaagaaaatacttgtttgggaaattattgggttggtttgaaattgcatgcaactgaatggtttggtta |
92 |
Q |
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| T |
32806964 |
aaagagaagacttgtttaggaagttattgagttggttggaa-ttgcatgcaactgaatggtttggtta |
32807030 |
T |
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