View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8486_low_6 (Length: 326)
Name: NF8486_low_6
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8486_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 22877582 - 22877891
Alignment:
| Q |
5 |
gaactcatattggatgtcagtgttaaactactttacactgacattgtatgcacattaaactccgtaatcaattcatataattttgatacacgtaatgaat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22877582 |
gaactcatattggatgtcagtgttaaactactttacactgacattgtatgcacattaaactccgtaatcaattcatataattttgatacacgtaatgaat |
22877681 |
T |
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| Q |
105 |
atcagccaattcggcgtaaggtacctggtccaaggctataaatgtggtgtgtgaccacatccacagacttattagatttgcttataaaatccttaaacca |
204 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22877682 |
atcagccaatttggcgtaaggtacctggtccaaggctataaatgtggtgtgtgaccacatccacagacttattagatttgcttataaaatccttaaacca |
22877781 |
T |
|
| Q |
205 |
cgttgcatcaaagaaacctccaggcgcaatgactaatggcttaggctcaacatctttatatgcattgtaaactacgtctcttaaagcaataacatcagaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22877782 |
cgttgcatcaaagaaacctccaggcgcaatgactaatggctttggctcaacgtctttatatgcattgtaaactacgtctcttaaagcaataacatcataa |
22877881 |
T |
|
| Q |
305 |
gcatattgat |
314 |
Q |
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|||||||||| |
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| T |
22877882 |
gcatattgat |
22877891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 26366489 - 26366527
Alignment:
| Q |
126 |
tacctggtccaaggctataaatgtggtgtgtgaccacat |
164 |
Q |
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| T |
26366489 |
tacctggtccaagggtataaatgtggtgggtgaccacat |
26366527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 38357283 - 38357369
Alignment:
| Q |
179 |
gatttgcttataaaatccttaaaccacgttgcatcaaagaaacctccaggcgcaatgactaatggcttaggctcaacatctttatat |
265 |
Q |
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| T |
38357283 |
gatttgcttaagaactccttaaaccaattttcatcaaagaagcctccaggtgcaatgactagtggctttggctcaacttctctatat |
38357369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 38355120 - 38355172
Alignment:
| Q |
194 |
tccttaaaccacgttgcatcaaagaaacctccaggcgcaatgactaatggctt |
246 |
Q |
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| T |
38355120 |
tccttaaaccaatttgcatcaaagaagcctccaggtgcaatgactagtggctt |
38355172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 29973929 - 29973876
Alignment:
| Q |
13 |
attggatgtcagtgttaaactactttacactgacattgtatgcacattaaactc |
66 |
Q |
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| T |
29973929 |
attggatgtcagtgtaaaactaatttacaccgacattttaggcccattaaactc |
29973876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 246
Target Start/End: Original strand, 47980081 - 47980201
Alignment:
| Q |
126 |
tacctggtccaaggctataaatgtggtgtgtgaccacatccacagacttattagatttgcttataaaatccttaaaccacgttgcatcaaagaaacctcc |
225 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||| | | || | ||| || ||| || | ||||||||| ||||||||||||| ||||| |
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| T |
47980081 |
tacctggtccaaggttataaatgtggtgggtgaccacatctgccaatttctctgatctgtttaagaacttcttaaaccaatttgcatcaaagaagcctcc |
47980180 |
T |
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| Q |
226 |
aggcgcaatgactaatggctt |
246 |
Q |
| |
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||| ||||||| || |||||| |
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| T |
47980181 |
aggtgcaatgattagtggctt |
47980201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 47990339 - 47990377
Alignment:
| Q |
126 |
tacctggtccaaggctataaatgtggtgtgtgaccacat |
164 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||| |
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| T |
47990339 |
tacctggtccaaggttataaatgtggtgggtgaccacat |
47990377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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