View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8486_low_9 (Length: 283)

Name: NF8486_low_9
Description: NF8486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8486_low_9
NF8486_low_9
[»] chr1 (1 HSPs)
chr1 (1-283)||(10740391-10740673)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 10740391 - 10740673
Alignment:
Q  1 tttaccttctttcttagcctaataacggccgtgtcaaattgatgacaaccaagaccattacagcagtatatttcactgctgcttcaagttcataacaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10740391 tttaccttctttcttagcctaataacggccgtgtcaaattgatgacaaccaagaccattacagcagtatatttcactgctgcttcaagttcataacaaaa 10740490  T
Q  101 ttagtttattgtatagaatgttgacctcaagacataagggccacgtttggagtgtaaactcagaattttaaaatatgctttacatatttctgaacagtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10740491 ttagtttattgtatagaatgttgacctcaagacataagggccacgtttggagtgtaaactcagaattttaaaatatgctttacatatttctgaacagtat 10740590  T
Q  201 tccatttctgtagaagcttgcacaacaaagcacacttgctagtttctaaacacagagaaacaaaaagatgataggaataaaaa 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10740591 tccatttctgtagaagcttgcacaacaaagcacacttgctagtttctaaacacagagaaacaaaaagatgatagaaataaaaa 10740673  T

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