View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8487_high_14 (Length: 208)
Name: NF8487_high_14
Description: NF8487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8487_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 10219303 - 10219117
Alignment:
| Q |
1 |
cgtacttctctccatagttcttctatcttctcattcattctca--gatactatgttatttcatctggttcagttgttgtgatcgatcacca---tataaa |
95 |
Q |
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| T |
10219303 |
cgtacttctctccatagttcttctatcttctcattcattctcacagatactatgttatttcatctggttcagttgt---gatcgatcaccaccatataaa |
10219207 |
T |
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| Q |
96 |
aatcactcacttccaccaaagtgcaagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctcagctt |
188 |
Q |
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| T |
10219206 |
aaa---tcacttccaccaaactgcaagtcccacatcaaccaattcataaactaaactatgctgcttacttataaaatgaaaagacctcagctt |
10219117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 10102729 - 10102802
Alignment:
| Q |
123 |
tcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctcagcttgtcaaaat |
196 |
Q |
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| T |
10102729 |
tcccacatcgaccaattcataaactaaactatgctgcttacttataaaacgaaaagacctcagcttgttaaaat |
10102802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13853988 - 13854027
Alignment:
| Q |
1 |
cgtacttctctccatagttcttctatcttctcattcattc |
40 |
Q |
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| T |
13853988 |
cgtacttctctccatagttcttctatcttctcattcattc |
13854027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 10212463 - 10212402
Alignment:
| Q |
122 |
gtcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctc |
183 |
Q |
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| T |
10212463 |
gtcccacatctaccaatgcataaactaaactatgctgatcacatataaaatgaaatgacctc |
10212402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 10105811 - 10105867
Alignment:
| Q |
120 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaa |
176 |
Q |
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||||||||||||| ||| || |||||||||||||||| |||| | |||||||||||| |
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| T |
10105811 |
aagtcccacatcgcccagttcataaactaaactatgcagctttcatataaaatgaaa |
10105867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 10109224 - 10109275
Alignment:
| Q |
120 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaa |
171 |
Q |
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| T |
10109224 |
aagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaa |
10109275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 10209914 - 10209863
Alignment:
| Q |
120 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaa |
171 |
Q |
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||||||||||||| |||||| |||||||||||||||| |||| | ||||||| |
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| T |
10209914 |
aagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaa |
10209863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 12104737 - 12104686
Alignment:
| Q |
120 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaa |
171 |
Q |
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|||||||||||||||||||| |||||||||| ||||| ||| || ||||||| |
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| T |
12104737 |
aagtcccacatcgaccaattcataaactaaattatgcagctcacatataaaa |
12104686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 13855940 - 13856002
Alignment:
| Q |
121 |
agtcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctc |
183 |
Q |
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||||||||||| ||||||| |||||||||||||||| | | || ||||||| |||| |||||| |
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| T |
13855940 |
agtcccacatcaaccaattcataaactaaactatgcagttcacatataaaaagaaaggacctc |
13856002 |
T |
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