View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8487_high_2 (Length: 427)

Name: NF8487_high_2
Description: NF8487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8487_high_2
NF8487_high_2
[»] chr1 (8 HSPs)
chr1 (1-410)||(12774829-12775248)
chr1 (1-235)||(12804511-12804745)
chr1 (3-236)||(50788818-50789051)
chr1 (21-236)||(4160289-4160504)
chr1 (11-235)||(36989242-36989466)
chr1 (5-243)||(42287013-42287251)
chr1 (21-235)||(31644058-31644272)
chr1 (36-235)||(28496106-28496305)
[»] chr8 (2 HSPs)
chr8 (21-236)||(5788722-5788937)
chr8 (11-217)||(33186637-33186843)
[»] chr2 (3 HSPs)
chr2 (98-235)||(40040778-40040915)
chr2 (12-235)||(42898201-42898424)
chr2 (33-236)||(38895856-38896059)
[»] chr4 (2 HSPs)
chr4 (78-235)||(22085506-22085663)
chr4 (12-237)||(30518146-30518371)
[»] chr7 (2 HSPs)
chr7 (69-237)||(40749350-40749518)
chr7 (105-217)||(44150818-44150930)
[»] chr3 (1 HSPs)
chr3 (51-220)||(52248370-52248539)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 12774829 - 12775248
Alignment:
Q  1 caaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12774829 caaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactattttag 12774928  T
Q  101 aaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12774929 aaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggag 12775028  T
Q  201 tatagatgtgactgtggcactctcttctccaggtaataaacatatacctaataaatcagttccaatttttctactgcgagttttttcgctatcgattttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12775029 tatagatgtgactgtggcactctcttctccaggtaataaacatatacctaataaatcagttccaatttttctattgcgagttttttcgctatcgattttt 12775128  T
Q  301 gttaatgcaatct----------tatatatatatttgatagcatggtttaaattgtggtcgcaataacgctgcaaacatttatatatactagcagaaaac 390  Q
    |||||||||||||          |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  12775129 gttaatgcaatcttatatatatatatatatatatttgatagcatggtttaaattgtggtcgcaatgacgctacaaacatttatatatactagcagaaaac 12775228  T
Q  391 atgattgatatggtggaaat 410  Q
    ||||| |||||||| |||||    
T  12775229 atgatcgatatggtcgaaat 12775248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 12804745 - 12804511
Alignment:
Q  1 caaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || |||    
T  12804745 caaagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaagcacttttctag 12804646  T
Q  101 aaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggag 200  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12804645 aaagcatggtgagaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggag 12804546  T
Q  201 tatagatgtgactgtggcactctcttctccaggta 235  Q
    ||||||||||||||||||||||||||||| |||||    
T  12804545 tatagatgtgactgtggcactctcttctcaaggta 12804511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 50789051 - 50788818
Alignment:
Q  3 aagagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaa 102  Q
    ||||||||||||||| ||||||| || || ||||| ||||| ||||||||||||||||| ||||| ||||||||||| |||||||||||||| | | | |    
T  50789051 aagagaaaggtttatctgtgtcctgagcccacatgcgttcatcatgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgca 50788952  T
Q  103 agcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagta 202  Q
    | ||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||| || |  || ||    
T  50788951 aacatggtgagaagaaatggaagtgtgataagtgctctaagaagtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaata 50788852  T
Q  203 tagatgtgactgtggcactctcttctccaggtaa 236  Q
    ||| ||||||||||||||||||||||||||||||    
T  50788851 taggtgtgactgtggcactctcttctccaggtaa 50788818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 4160289 - 4160504
Alignment:
Q  21 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 120  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| |||| ||| || ||||| |||||||| || |    
T  4160289 tgtccagagccaacatgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacggtgagaagaagt 4160388  T
Q  121 ggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 220  Q
    |||||||||| || ||||||||   |||||| ||||| || ||||||||||||||||| || | |||||| ||||| |||||||  ||||||||||| ||    
T  4160389 ggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgtgactgtggaac 4160488  T
Q  221 tctcttctccaggtaa 236  Q
     |||||||| ||||||    
T  4160489 cctcttctcaaggtaa 4160504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 36989242 - 36989466
Alignment:
Q  11 ggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggt 110  Q
    ||||||| | ||||| |||||  ||||||| |||||| ||||| |||| || ||||| || || ||||||||||| || |||| || |||||||||||||    
T  36989242 ggtttatgtttgtcctgaaccttcatgtgtacaccataaccctgcaagagcacttggtgatcttactggaattaaaaagcacttttgtagaaagcatggt 36989341  T
Q  111 gagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtg 210  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |  |||||||| | ||| || | |||||    
T  36989342 gagaaaaagtggaaatgtgataagtgttctaagaaatatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtg 36989441  T
Q  211 actgtggcactctcttctccaggta 235  Q
    ||||||| ||  |||| ||||||||    
T  36989442 actgtggaaccatcttttccaggta 36989466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 42287013 - 42287251
Alignment:
Q  5 gagaaaggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaag 104  Q
    ||||||||||||||||||||| || || ||||| || || || ||||||||||| ||| | || || || ||||||||||| || || |  | | | |||    
T  42287013 gagaaaggtttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaag 42287112  T
Q  105 catggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtata 204  Q
    || |||||||| || ||||| |||||||| || || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||  || ||||    
T  42287113 cacggtgagaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatata 42287212  T
Q  205 gatgtgactgtggcactctcttctccaggtaataaacat 243  Q
    ||||||| |||||||| |||||||| |||||| ||||||    
T  42287213 gatgtgattgtggcaccctcttctctaggtaacaaacat 42287251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 21 - 235
Target Start/End: Complemental strand, 31644272 - 31644058
Alignment:
Q  21 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 120  Q
    |||||||| ||  |||||||||| ||| ||||||||||||||||||| || || || |||||||||||||| |||  |||||| ||||||||||||||||    
T  31644272 tgtccagagccttcatgtgttcatcataacccttcaagggctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaat 31644173  T
Q  121 ggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 220  Q
    |||| ||||| ||||| || ||||  ||||||||||| ||||||||||||||||| ||||| || |||||||||   || |||| |||||| ||||| ||    
T  31644172 ggaaatgtgataagtgctcaaagatctatgctgttcattctgattggaaagctcactctaaaacctgtggtactcgagaatataaatgtgattgtggtac 31644073  T
Q  221 tctcttctccaggta 235  Q
     || || ||||||||    
T  31644072 ccttttttccaggta 31644058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 36 - 235
Target Start/End: Complemental strand, 28496305 - 28496106
Alignment:
Q  36 tgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagt 135  Q
    ||||| ||||||||||||||||| || ||||| |||||||| || || || || |||| |  ||||||||| |||||||| || ||||| |||||||| |    
T  28496305 tgtgtccaccatgacccttcaagagcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaat 28496206  T
Q  136 gttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggta 235  Q
    |||| || |||||||| || ||||||||||||||||||||| | || || |||||||| |  || || | ||||||||||||||| |||||||| |||||    
T  28496205 gttccaaaaaatatgcagtccaatctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta 28496106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 5788937 - 5788722
Alignment:
Q  21 tgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaat 120  Q
    |||||||||||||| ||||| || ||||| || ||||| ||  | || ||  | |||||||| |||||||||| ||  ||||||||||||||||| || |    
T  5788937 tgtccagaaccaacttgtgtgcatcatgatccatcaagagcattaggggatttgactggaatcaagaaacacttttccagaaagcatggtgagaagaagt 5788838  T
Q  121 ggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 220  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||||  || ||||||||||||||||| ||    
T  5788837 ggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgactgtggaac 5788738  T
Q  221 tctcttctccaggtaa 236  Q
     |||||||| ||||||    
T  5788737 cctcttctcaaggtaa 5788722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 33186637 - 33186843
Alignment:
Q  11 ggtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggt 110  Q
    ||||||| | ||||| ||||| || |||||||| ||||| ||||| || ||| | || ||  | ||||| || || || |||| || |||||| ||||||    
T  33186637 ggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgggataaaaaagcacttttgtagaaaacatggt 33186736  T
Q  111 gagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtg 210  Q
    |||||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||   ||||||| |||  ||||||| |||||    
T  33186737 gagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactctaaagtttgtggttctagagagtataaatgtg 33186836  T
Q  211 actgtgg 217  Q
    | |||||    
T  33186837 attgtgg 33186843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 40040778 - 40040915
Alignment:
Q  98 tagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaag 197  Q
    ||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||  ||||| |||||| |||||     
T  40040778 tagaaagcacggtgagaagaagtggaagtgtgataagtgttctaagaaatatgcagttcaatctgattggaaggctcatagtaagatttgtggcactaaa 40040877  T
Q  198 gagtatagatgtgactgtggcactctcttctccaggta 235  Q
    ||||| |||||||| |||||||| || |||||||||||    
T  40040878 gagtacagatgtgattgtggcacactattctccaggta 40040915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 42898201 - 42898424
Alignment:
Q  12 gtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtg 111  Q
    |||||| |||||||||||||||| ||||| ||||||||||| ||||| ||  | || ||||| ||||| || ||||| ||||  |  |||||||| ||||    
T  42898201 gtttatgtgtgtccagaaccaacttgtgtgcaccatgacccatcaagagccttgggggacctaactggtatcaagaagcacttctgcagaaagcacggtg 42898300  T
Q  112 agaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtga 211  Q
    |||| || ||||| ||||| ||||| |||||||| ||||| |||||||| || ||||||||||| || || || ||||| || |  || || ||||||||    
T  42898301 agaagaagtggaaatgtgacaagtgctctaagaagtatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagatgtga 42898400  T
Q  212 ctgtggcactctcttctccaggta 235  Q
    |||||| || |||||||| |||||    
T  42898401 ctgtggaaccctcttctcaaggta 42898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 38896059 - 38895856
Alignment:
Q  33 acatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaa 132  Q
    |||||||||||  || | |||||||||||| | || ||  | ||||| || ||||| |||| || ||| || || |||||||| || ||||||||||| |    
T  38896059 acatgtgttcataatcatccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgaga 38895960  T
Q  133 agtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcactctcttctccag 232  Q
    |||| || ||    |||||||||||||| ||||||||||| || || ||||||||||||||||  || || | |||||| ||||||||| |||| || ||    
T  38895959 agtgctcaaaattttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgtggcactatcttttcaag 38895860  T
Q  233 gtaa 236  Q
    ||||    
T  38895859 gtaa 38895856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 22085663 - 22085506
Alignment:
Q  78 ggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcatt 177  Q
    ||||| |||||||| |||  |||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||     
T  22085663 ggaataaagaaacattatagtagaaaacatggtgagaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcata 22085564  T
Q  178 ctaagacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggta 235  Q
      |||| |||||| ||||  ||||| | |||||| ||||||||  | |||||||||||    
T  22085563 gcaagatttgtggaactagagagtacaaatgtgattgtggcacaattttctccaggta 22085506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 30518371 - 30518146
Alignment:
Q  12 gtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtg 111  Q
    |||||| ||||||||||   ||| ||||| |||||||| ||||||||||| ||||| ||| | ||||| || || || |||| || ||||||||||||||    
T  30518371 gtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtg 30518272  T
Q  112 agaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtga 211  Q
    | || || ||||||||||| ||||| || ||    ||||||||||| || |||||||||||||| || || || ||||||||||  || || | ||||||    
T  30518271 aaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtga 30518172  T
Q  212 ctgtggcactctcttctccaggtaat 237  Q
    |||||| ||| |||| || |||||||    
T  30518171 ctgtggaactatcttttcaaggtaat 30518146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 40749350 - 40749518
Alignment:
Q  69 gacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattgga 168  Q
    |||||||| ||||| |||||||| | |  |||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |||||||||||||    
T  40749350 gacctcaccggaataaagaaacattttagtagaaaacatggcgagaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattgga 40749449  T
Q  169 aagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcactctcttctccaggtaat 237  Q
    |||||||  |||| |||||||||||||  || ||||  ||||| ||||| || |||||||| |||||||    
T  40749450 aagctcacactaaaacttgtggtactagagaatataagtgtgattgtggtacactcttctcaaggtaat 40749518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 44150930 - 44150818
Alignment:
Q  105 catggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtata 204  Q
    ||||||||||| |||||||| ||||| ||||| ||||| | ||||||||||||||| |||||||| |||||    || ||||||||||||| ||| || |    
T  44150930 catggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaataca 44150831  T
Q  205 gatgtgactgtgg 217  Q
     |||||| |||||    
T  44150830 aatgtgattgtgg 44150818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 220
Target Start/End: Complemental strand, 52248539 - 52248370
Alignment:
Q  51 ccttcaagggctcttggcgacctcactggaattaagaaacactattttagaaagcatggtgagaaaaaatggaagtgtgaaaagtgttctaagaaatatg 150  Q
    |||||||| || || || |||||||| ||| | || || |||| || |||||||||||||||||| |||||||| ||||||   |||||||| ||||| |    
T  52248539 ccttcaagagcactcggtgacctcacaggagtgaaaaagcacttttgtagaaagcatggtgagaagaaatggaaatgtgaacgttgttctaaaaaatacg 52248440  T
Q  151 ctgttcaatctgattggaaagctcattctaagacttgtggtactaaggagtatagatgtgactgtggcac 220  Q
    |||   ||| ||||| ||||| ||||   ||||  ||||| ||||  ||||||| |||||| ||||||||    
T  52248439 ctgcgaaatgtgatttgaaagttcatatgaagagctgtggaactagagagtataaatgtgattgtggcac 52248370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University