View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8487_high_4 (Length: 359)
Name: NF8487_high_4
Description: NF8487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8487_high_4 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 40552582 - 40552939
Alignment:
| Q |
1 |
tttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttgtgataaattatctggtgatgtatatataacaataat |
100 |
Q |
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| T |
40552582 |
tttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttatgataaattatctggtgatgtataaataacaataat |
40552681 |
T |
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| Q |
101 |
atggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagatttatttatttttatgactatggtta |
200 |
Q |
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| T |
40552682 |
atggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagatttatttatttttatgactatggttg |
40552781 |
T |
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| Q |
201 |
gtttcattctgaatagcagttgttataagtgattttattttcttagtaatacccttgtacnnnnnnnttaagcatgtatgaattgtgagttttcttattt |
300 |
Q |
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| T |
40552782 |
gtttcattctgaatagcagttgttataagtgattttattttcttagtaatacccttgtac-aaaaaattaagcatgtatgaattgtgagttttcttattt |
40552880 |
T |
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| Q |
301 |
gtagtaagagaataatttggggatgtttctttcttgctagggatatgaagtgctcaagc |
359 |
Q |
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| T |
40552881 |
gtagtaagagaataatttggggatgtttctttcttgctagggatatgaagtgctcaagc |
40552939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 22137555 - 22137753
Alignment:
| Q |
1 |
tttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttgtgataaattatctggtgatgtatatataacaataat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
22137555 |
tttctgtaatatgataacaatattgattaatttcatgttttcaagtaaaggttctgtacagttatgataaattatctggtgatgtataaataacaataat |
22137654 |
T |
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| Q |
101 |
atggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagatttatttatttttatgactatggtt |
199 |
Q |
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| T |
22137655 |
atggcatatggaatttggtgtttatgtttaatgtcttaattccacgtccccattatatttggtgggtcaaaagatttatttatttttatgactatggtt |
22137753 |
T |
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