View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8487_low_1 (Length: 769)
Name: NF8487_low_1
Description: NF8487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8487_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 308 - 753
Target Start/End: Complemental strand, 23717924 - 23717479
Alignment:
| Q |
308 |
agatgagttcgagtgggtatccatggttacggattttgctatcatacatatacctaactaacttcttcaattactcataactagaattcaataacaaaac |
407 |
Q |
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| T |
23717924 |
agatgagttcgagtgggtatccgtgggtacggattttgctatcatacctatacctaactaacttcttcaactactcataactagaatccaataacaaaac |
23717825 |
T |
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| Q |
408 |
tatctaacactaattagttatcttttttagggaacactaattattttattaaaaccaactaaatcagaattaaccataacattagattcctccatttggt |
507 |
Q |
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| T |
23717824 |
tatctaacactaattagttatcttttttaaggaacactaattattttattaaaaccaactaaatcagaattaaccataacattagattcctccatttggt |
23717725 |
T |
|
| Q |
508 |
ccctgacgtacttacaagacatgtttgtgattcgtgatgatcatgacctatagagtagttgatggacaatatattccaacaattacccatccaagaaaga |
607 |
Q |
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| T |
23717724 |
ccctgacgtacttacaagacatgtttgtgattcgtgatgatcatgacctatagagtagttgatggacaatatattccaacaattacccatccaagaaaga |
23717625 |
T |
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| Q |
608 |
ttacatgacaaatagagaaccacataaccttggtgtgtgatgtggtgtcacgctagactaatttgccaagaaagattagaaggtatactttttgttttaa |
707 |
Q |
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| T |
23717624 |
ttacatgacaaatagagaaccacataaccttggtgtgtgatgtggtgtcacgctagactaatttgccaagaaagattagaaggtatactttttgttttaa |
23717525 |
T |
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| Q |
708 |
aaaatagatatatagattttcatgggaatgcactttcccaacttct |
753 |
Q |
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| T |
23717524 |
aaaatagatatatagattttcatgggaatgcactttcccaacttct |
23717479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 70 - 250
Target Start/End: Complemental strand, 23718162 - 23717982
Alignment:
| Q |
70 |
tcgtctaacagactgacactctatttgactgagaaaaataatccagggagtttctgtttatataaaatgactaataaatgggaagtaaagtattttctac |
169 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23718162 |
tcgtctaacagactgacactctaactgactgagaaaaatgatccagggagtttctatttatataaaatgactaataaatgggaagtaaagtattttctac |
23718063 |
T |
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| Q |
170 |
attttggaacatatttgagtatagattcgggatgagtgtccatatcctcgttattcgtctcatatctgtgttttgaaatag |
250 |
Q |
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| T |
23718062 |
attttggaacatatttgagtatagattcgggatgggtgtccatatcctcgttattcgtctcatatctgtgttttgaaatag |
23717982 |
T |
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