View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8487_low_10 (Length: 243)

Name: NF8487_low_10
Description: NF8487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8487_low_10
NF8487_low_10
[»] chr6 (9 HSPs)
chr6 (1-239)||(14214125-14214363)
chr6 (1-175)||(14172698-14172872)
chr6 (1-175)||(14177234-14177408)
chr6 (1-175)||(14165867-14166041)
chr6 (198-239)||(31869717-31869758)
chr6 (198-239)||(10298869-10298910)
chr6 (79-135)||(13506244-13506300)
chr6 (79-135)||(13528887-13528943)
chr6 (199-239)||(29790216-29790256)
[»] chr7 (10 HSPs)
chr7 (198-239)||(35570266-35570307)
chr7 (195-239)||(36341626-36341670)
chr7 (198-239)||(6766762-6766803)
chr7 (198-239)||(4131715-4131756)
chr7 (198-239)||(8656083-8656124)
chr7 (198-239)||(25566759-25566800)
chr7 (198-239)||(27045620-27045661)
chr7 (198-231)||(42662196-42662229)
chr7 (198-238)||(5529020-5529060)
chr7 (199-239)||(24424624-24424664)
[»] chr8 (1 HSPs)
chr8 (196-239)||(9632162-9632205)
[»] chr4 (9 HSPs)
chr4 (198-239)||(30191680-30191721)
chr4 (196-239)||(19897646-19897689)
chr4 (198-239)||(2760939-2760980)
chr4 (198-239)||(5428587-5428628)
chr4 (198-239)||(35381106-35381147)
chr4 (199-239)||(3036990-3037030)
chr4 (199-239)||(12240390-12240430)
chr4 (199-239)||(20875459-20875499)
chr4 (195-239)||(23360184-23360228)
[»] chr1 (6 HSPs)
chr1 (198-239)||(15382638-15382679)
chr1 (198-239)||(44451500-44451541)
chr1 (204-239)||(30385357-30385392)
chr1 (200-239)||(38153489-38153528)
chr1 (198-239)||(40771984-40772025)
chr1 (199-239)||(3485419-3485459)
[»] chr3 (8 HSPs)
chr3 (199-239)||(15333018-15333058)
chr3 (199-239)||(41252975-41253015)
chr3 (204-238)||(3430487-3430521)
chr3 (199-233)||(27813819-27813853)
chr3 (198-239)||(22782275-22782316)
chr3 (198-239)||(22786639-22786680)
chr3 (198-239)||(32273719-32273760)
chr3 (198-239)||(42761695-42761736)
[»] chr2 (5 HSPs)
chr2 (200-239)||(9006996-9007035)
chr2 (200-239)||(43444752-43444791)
chr2 (198-239)||(7799856-7799897)
chr2 (199-239)||(11931701-11931741)
chr2 (200-239)||(42133763-42133802)
[»] scaffold0009 (1 HSPs)
scaffold0009 (198-240)||(217087-217129)
[»] chr5 (4 HSPs)
chr5 (198-239)||(24916460-24916501)
chr5 (198-239)||(10696799-10696840)
chr5 (198-239)||(24992350-24992391)
chr5 (198-238)||(12007845-12007885)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 14214363 - 14214125
Alignment:
Q  1 tgctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtatttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14214363 tgctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgaaatgtatttt 14214264  T
Q  101 ctatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgttggtttaataaatgattagattcgt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||    
T  14214263 ctatgtgtaattgcatctttatctatatttcatcttatgtagtggaggcttacgaagtcaaccattgacaattgttggtctaataaatgatttcattcgt 14214164  T
Q  201 ttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    || ||||||||||||||||||||| |||||||| |||||    
T  14214163 tttaaaatacatgtcgcaattttataatgtgcattattc 14214125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 14172872 - 14172698
Alignment:
Q  1 tgctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtatttt 100  Q
    ||||||||||||||||||||| ||| ||| |||||||||||| ||| |||||||| |||| ||||||||| ||||||||||||||||||| |||||||||    
T  14172872 tgctggttttggagctaataattgtgagacagcttttgaaaaaccacaggaaaagtatgtgcgtgctgcaatccatcttcgaaacaatgaaatgtatttt 14172773  T
Q  101 ctatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  14172772 ctatgtgtaattgcatctttatctataattcatcttatgtagtgtaggcttatgaaatcaaccattgacaattgt 14172698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 14177408 - 14177234
Alignment:
Q  1 tgctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtatttt 100  Q
    ||||||||||||||||||||| ||| ||| |||||||||||| ||| |||||||| |||| ||||||||| ||||||||||||||||||| |||||||||    
T  14177408 tgctggttttggagctaataattgtgagacagcttttgaaaaaccacaggaaaagtatgtgcgtgctgcaatccatcttcgaaacaatgaaatgtatttt 14177309  T
Q  101 ctatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  14177308 ctatgtgtaattgcatctttatctataattcatcttatgtagtgtaggcttatgaaatcaaccattgacaattgt 14177234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 14166041 - 14165867
Alignment:
Q  1 tgctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtatttt 100  Q
    ||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||| |||| || |||||||||||||||||||||| ||||||    
T  14166041 tgctggttttggagctaataattgtcagaaaggttttgaaaaaccagaggaaaagaaggttcttgctacaatccatcttcgaaacaatgagatctatttt 14165942  T
Q  101 ctatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgt 175  Q
    ||  |||||||||| || |||||||||||||||||||| |||| ||| | ||  || | ||||||||||||||||    
T  14165941 cttggtgtaattgcttcattatctataattcatcttatttagttgagacatataaaataaaccattgacaattgt 14165867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 31869717 - 31869758
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  31869717 cgtttcaaaatacatgtcgcgattttacaatgtacactattc 31869758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 10298910 - 10298869
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||| ||||||||||| |||||||| |||||    
T  10298910 cgtttcaaaatacatatcgcaattttataatgtgcattattc 10298869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 13506244 - 13506300
Alignment:
Q  79 tcgaaacaatgagatgtattttctatgtgtaattgcatctttatctataattcatct 135  Q
    ||||||||||||||| | |||| ||  |||||| || ||||||||||||||||||||    
T  13506244 tcgaaacaatgagatcttttttgtaaatgtaatggcttctttatctataattcatct 13506300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 13528887 - 13528943
Alignment:
Q  79 tcgaaacaatgagatgtattttctatgtgtaattgcatctttatctataattcatct 135  Q
    ||||||||||||||| | |||| ||  |||||| || ||||||||||||||||||||    
T  13528887 tcgaaacaatgagatcttttttgtaaatgtaatagcttctttatctataattcatct 13528943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 29790216 - 29790256
Alignment:
Q  199 gtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||||||||| ||||||  |||||||    
T  29790216 gtttcaaaatacatgtcgcaattttgcaatgtatactattc 29790256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 35570307 - 35570266
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35570307 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 35570266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 36341626 - 36341670
Alignment:
Q  195 attcgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||||||||||||| |||| |||||||||||||||    
T  36341626 attcgtttcaaaatacatgtcgcatttttgcaatgtgcactattc 36341670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 6766803 - 6766762
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  6766803 cgtttcaaaatacatgtcgcaattttacaatctgcattattc 6766762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 4131756 - 4131715
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||| ||||||||||||||||||||  |||||||    
T  4131756 cgtttcaaaatatatgtcgcaattttacaatgtatactattc 4131715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 8656083 - 8656124
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||| |||||||||  |||||||||||||||||||||||||    
T  8656083 cgttttaaaatacataccgcaattttacaatgtgcactattc 8656124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 25566800 - 25566759
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  25566800 cgtttcaaaatacatgtccaatttttacaatgtgcactattc 25566759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 27045661 - 27045620
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||| |||||||||||||||  |||||||    
T  27045661 cgtttcaaaatacatgttgcaattttacaatgtatactattc 27045620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 231
Target Start/End: Original strand, 42662196 - 42662229
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtg 231  Q
    |||||||||||||||||||||||||| |||||||    
T  42662196 cgtttcaaaatacatgtcgcaattttgcaatgtg 42662229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 5529020 - 5529060
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactatt 238  Q
    ||||||||||||||||||  ||||||||||||| |||||||    
T  5529020 cgtttcaaaatacatgtcctaattttacaatgtacactatt 5529060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 24424664 - 24424624
Alignment:
Q  199 gtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||| ||||||||| |||| ||||||||    
T  24424664 gtttcaaaatacatgtcacaattttactatgttcactattc 24424624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 9632162 - 9632205
Alignment:
Q  196 ttcgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  9632162 ttcgtttcaaaatacatgtcgcaattttacaatgtgtactattc 9632205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 30191721 - 30191680
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  30191721 cgtttcaaaatacatgttgcaattttacaatgtgcactattc 30191680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 239
Target Start/End: Original strand, 19897646 - 19897689
Alignment:
Q  196 ttcgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||    
T  19897646 ttcgtttcaaaatacttgtcgcaattttacaatgtacactattc 19897689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 2760980 - 2760939
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  2760980 cgtttcaaaatacatgtccaatttttacaatgtgcactattc 2760939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 5428587 - 5428628
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||||| |||  |||||||||||||||    
T  5428587 cgtttcaaaatacatgtcgcattttggcaatgtgcactattc 5428628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 35381147 - 35381106
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  35381147 cgtttcaaaatacatgtccaatttttacaatgtgcactattc 35381106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 3036990 - 3037030
Alignment:
Q  199 gtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||||||| |||| ||||||||| |||||||    
T  3036990 gtttcaaaatacatgtcgtaattatacaatgtgtactattc 3037030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 12240430 - 12240390
Alignment:
Q  199 gtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||||||  | ||||||||||||||||||||    
T  12240430 gtttcaaaatacatgtccaatttttacaatgtgcactattc 12240390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 20875499 - 20875459
Alignment:
Q  199 gtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||||| | ||||||| ||||||||||||||    
T  20875499 gtttcaaaatacatgttgtaattttaaaatgtgcactattc 20875459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 23360184 - 23360228
Alignment:
Q  195 attcgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||| ||||||||||||||||||| |||| |||| ||||||||||    
T  23360184 attcatttcaaaatacatgtcgcatttttgcaatatgcactattc 23360228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 15382679 - 15382638
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  15382679 cgtttcaaaatacatgtcgcaattttacaatgtacactattc 15382638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 44451541 - 44451500
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  44451541 cgtttcaaaatacatgttgcaattttactatgtgcactattc 44451500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 30385392 - 30385357
Alignment:
Q  204 aaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30385392 aaaatacatgtcgcaattttataatgtgcactattc 30385357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 38153528 - 38153489
Alignment:
Q  200 tttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  38153528 tttcaaaatacatgtcgcatttttataatgtgcactattc 38153489  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 40772025 - 40771984
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  40772025 cgtttcaaaatacatgtccaatttttacaatgtgcactattc 40771984  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 3485459 - 3485419
Alignment:
Q  199 gtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||| ||||||||||||| ||||||||||| ||||||||||    
T  3485459 gttttaaaatacatgtcgtaattttacaatatgcactattc 3485419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 15333058 - 15333018
Alignment:
Q  199 gtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  15333058 gttttaaaatacatgtcgcaattttacaatgtgcactattc 15333018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 41253015 - 41252975
Alignment:
Q  199 gtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  41253015 gtttcaaaatatatgtcgcaattttacaatgtgcactattc 41252975  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 3430521 - 3430487
Alignment:
Q  204 aaaatacatgtcgcaattttacaatgtgcactatt 238  Q
    ||||||||||| |||||||||||||||||||||||    
T  3430521 aaaatacatgttgcaattttacaatgtgcactatt 3430487  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 27813853 - 27813819
Alignment:
Q  199 gtttcaaaatacatgtcgcaattttacaatgtgca 233  Q
    |||||||||||||||| ||||||||||||||||||    
T  27813853 gtttcaaaatacatgttgcaattttacaatgtgca 27813819  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 22782275 - 22782316
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  22782275 cgtttcaaactacatgtcgcaattttttaatgtgcactattc 22782316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 22786639 - 22786680
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||| ||||||||||||||||  ||||||||||||||    
T  22786639 cgtttcaaactacatgtcgcaattttttaatgtgcactattc 22786680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 32273719 - 32273760
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||| ||||| |||||||||| |||||    
T  32273719 cgtttcaaaatacatgtcgtaatttcacaatgtgcattattc 32273760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 42761736 - 42761695
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  42761736 cgtttcaaaatacatgtccaatttttacaatgtgcactattc 42761695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 9007035 - 9006996
Alignment:
Q  200 tttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  9007035 tttcaaaatacatgtcgcaattttacaatgtgcattattc 9006996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 43444791 - 43444752
Alignment:
Q  200 tttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  43444791 tttcaaaatacatgtcgcaattttacaatgtgcattattc 43444752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 7799856 - 7799897
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  7799856 cgtttcaaaatacatgtcgcatttttgcaatgtgcactattc 7799897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 11931701 - 11931741
Alignment:
Q  199 gtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  11931701 gtttcaaaatacatgtcgcaattttacaatatgcattattc 11931741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 42133763 - 42133802
Alignment:
Q  200 tttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||| ||||||| ||||||||||||||    
T  42133763 tttcaaaatacatgtcgtaattttaaaatgtgcactattc 42133802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 217129 - 217087
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattct 240  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  217129 cgtttcaaaatacaagtcgcaattttacaatgtgcaatattct 217087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 24916501 - 24916460
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  24916501 cgtttcaaaatacatgtcacaattttacaatgtgtactattc 24916460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 10696799 - 10696840
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    |||||||||||||| ||||| ||||| |||||||||||||||    
T  10696799 cgtttcaaaatacacgtcgctattttgcaatgtgcactattc 10696840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 24992391 - 24992350
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactattc 239  Q
    ||||||||||||||||||  | ||||||||||||||||||||    
T  24992391 cgtttcaaaatacatgtcatagttttacaatgtgcactattc 24992350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 12007885 - 12007845
Alignment:
Q  198 cgtttcaaaatacatgtcgcaattttacaatgtgcactatt 238  Q
    ||||||||||||||||||||| ||||| | |||||||||||    
T  12007885 cgtttcaaaatacatgtcgcatttttatattgtgcactatt 12007845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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