View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8487_low_12 (Length: 228)

Name: NF8487_low_12
Description: NF8487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8487_low_12
NF8487_low_12
[»] chr5 (1 HSPs)
chr5 (16-216)||(12078857-12079057)
[»] scaffold0606 (1 HSPs)
scaffold0606 (16-185)||(5497-5667)
[»] chr3 (4 HSPs)
chr3 (57-179)||(10738109-10738230)
chr3 (35-183)||(7920729-7920877)
chr3 (121-185)||(19643477-19643537)
chr3 (121-216)||(12411829-12411923)
[»] chr2 (2 HSPs)
chr2 (20-183)||(26815927-26816091)
chr2 (77-180)||(27744510-27744613)
[»] chr6 (7 HSPs)
chr6 (16-134)||(16740179-16740297)
chr6 (16-219)||(14079813-14080013)
chr6 (121-183)||(12394578-12394640)
chr6 (121-183)||(12399078-12399140)
chr6 (73-142)||(12399009-12399077)
chr6 (40-133)||(31719660-31719755)
chr6 (78-174)||(14172061-14172157)
[»] chr7 (2 HSPs)
chr7 (35-130)||(24811146-24811242)
chr7 (77-123)||(20598305-20598351)
[»] chr4 (1 HSPs)
chr4 (35-132)||(32468525-32468624)
[»] chr1 (1 HSPs)
chr1 (76-216)||(21616753-21616892)
[»] scaffold1681 (1 HSPs)
scaffold1681 (83-136)||(1009-1062)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 12078857 - 12079057
Alignment:
Q  16 atgagaatgttggagataatggaggtagtggtcgtacactttgtccttcattgctccttaatgaaagtgacatccattgaccttctaacacttccagaac 115  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12078857 atgagaatgttggagataatggaggtagtggtcgtacgctttgtccttcattgcaccttaatgaaagtgacatccattgaccttctaacacttccagaac 12078956  T
Q  116 cattgtgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgttcttcagctattcatagtcaggtttctagagtctgatgtcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  12078957 cattgtgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgttcttcagctattcatagtcaggtttccagagtctgaggtcc 12079056  T
Q  216 a 216  Q
    |    
T  12079057 a 12079057  T

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Target: scaffold0606 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 5497 - 5667
Alignment:
Q  16 atgagaatgttggagataatggaggtagtggtcgtacactttgtccttcattgctcctt-aatgaaagtgacatccattgaccttctaacacttccagaa 114  Q
    ||||||||| ||||| || ||||| |||||||| |||| ||||| |||||||| ||||| || ||||||||||| |||||||||||| ||||| ||||||    
T  5497 atgagaatgctggaggtagtggagatagtggtcatacattttgttcttcattg-tccttcaaggaaagtgacattcattgaccttctgacact-ccagaa 5594  T
Q  115 ccattgtgcttgatcttcagaactat--caacgcttgacatccaatgcttctgctcctttgttcttcagctat 185  Q
     |||| |||||||||||||||| |||  ||  |||||||||||||||||||||||||||||||||||||||||    
T  5595 acattatgcttgatcttcagaattatatcatagcttgacatccaatgcttctgctcctttgttcttcagctat 5667  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 179
Target Start/End: Original strand, 10738109 - 10738230
Alignment:
Q  57 tgtccttcattgctccttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatcaacgcttgacatcca 156  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||| |||| ||||||| | |||||| |||| ||||||||  ||||||||||||    
T  10738109 tgtccttcattgttctttaatgaaagtgacatccattgaccttctaacac-tccaaaaccattatacttgattttcataactatcatagcttgacatcca 10738207  T
Q  157 atgcttctgctcctttgttcttc 179  Q
    |||||| ||||||||||||||||    
T  10738208 atgcttatgctcctttgttcttc 10738230  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 7920877 - 7920729
Alignment:
Q  35 tggaggtagtggtcgtacactttgtccttcattgctccttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcag 134  Q
    ||||| ||||||||||||||||||||||||| ||  | | |||||||||||||  ||||| |||||| |||  | |||||||||||||||||| |||| |    
T  7920877 tggagatagtggtcgtacactttgtccttcagtgtacttcaatgaaagtgacacacattggccttctgacatcttcagaaccattgtgcttgaccttcgg 7920778  T
Q  135 aactatcaacgcttgacatccaatgcttctgctcctttgttcttcagct 183  Q
    || || ||| |||| ||||||||||||||| ||||||||||||||||||    
T  7920777 aaataccaaagcttaacatccaatgcttctactcctttgttcttcagct 7920729  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 19643537 - 19643477
Alignment:
Q  121 tgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgttcttcagctat 185  Q
    ||||||||||||||||||||||    | |||||||| || |||||||||||||||||||||||||    
T  19643537 tgcttgatcttcagaactatca----tagacatccattgtttctgctcctttgttcttcagctat 19643477  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 12411923 - 12411829
Alignment:
Q  121 tgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgttcttcagctattcatagtcaggtttctagagtctgatgtcca 216  Q
    |||||| |||||||||||| ||  |||||||||||||| ||| ||| |||||| |||||||||||  | |||  || ||||||||||||| |||||    
T  12411923 tgcttggtcttcagaactaccat-gcttgacatccaatacttatgcacctttggtcttcagctatcaagagtttggcttctagagtctgaggtcca 12411829  T

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Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 26815927 - 26816091
Alignment:
Q  20 gaatgttggagataatggaggtagtggtcgtacact-ttgtccttcattgctccttaatgaaagtgacatccattgaccttctaacacttccagaaccat 118  Q
    |||||||||||  | ||||||||||||| ||||| | || ||||||||||    ||||||||| |||||||||| |||||| |  |||||||||||||||    
T  26815927 gaatgttggaggcagtggaggtagtggttgtacattgttttccttcattgtcttttaatgaaattgacatccatcgaccttttgtcacttccagaaccat 26816026  T
Q  119 tgtgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgttcttcagct 183  Q
    |||| |||||||| ||||||||||| |||| ||||||||||||| |||||||||| || ||||||    
T  26816027 tgtgattgatctttagaactatcaaagcttaacatccaatgcttatgctcctttgctcatcagct 26816091  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 27744613 - 27744510
Alignment:
Q  77 tgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgttc 176  Q
    ||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| ||| ||| || ||   |||||||||||||||| |||||||||| ||    
T  27744613 tgaaagtgacatccattgatcttctgacatttccaaaaccattgtgcttgatcgtcataaccattaaaatttgacatccaatgcttttgctcctttggtc 27744514  T
Q  177 ttca 180  Q
    ||||    
T  27744513 ttca 27744510  T

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Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 16740179 - 16740297
Alignment:
Q  16 atgagaatgttggagataatggaggtagtggtcgtacactttgtccttcattgctccttaatgaaagtgacatccattgaccttctaacacttccagaac 115  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||  | | |||| ||||||||| |||||||||||| |||  | ||||||    
T  16740179 atgagaatgttagagatagtggaggtagtggtcgtacactttgtccttaattgtacttcaatgtaagtgacattcattgaccttctgacatcttcagaac 16740278  T
Q  116 cattgtgcttgatcttcag 134  Q
    |||||||||||||||||||    
T  16740279 cattgtgcttgatcttcag 16740297  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 14079813 - 14080013
Alignment:
Q  16 atgagaatgttggagataatggaggtagtggtcgtacactttgtccttcattgctccttaatgaaagtgacatccattgaccttctaacacttccagaac 115  Q
    ||||||||||| ||| || || ||| ||||||||| |||||||||||||||||  | | ||||| | |||||||||||||||||    | ||| ||||||    
T  14079813 atgagaatgttagaggtagtgaaggcagtggtcgtgcactttgtccttcattgtacttcaatgataatgacatccattgacctt---tcccttgcagaac 14079909  T
Q  116 cattgtgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgttcttcagctattcatagtcag-gtttctagagtctgatgtc 214  Q
     ||  ||||||||||||||| ||| ||  |||||||||||| |  |||||||||||||||||| || ||| || |||| | ||||| ||||||||||||     
T  14079910 aatcatgcttgatcttcagagctaccattgcttgacatccattaattctgctcctttgttctttagttatccagagtctgagtttc-agagtctgatgtt 14080008  T
Q  215 catct 219  Q
    |||||    
T  14080009 catct 14080013  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 12394578 - 12394640
Alignment:
Q  121 tgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgttcttcagct 183  Q
    ||||||||||||||||||||||    |||||||||||||||||| ||||||||| ||||||||    
T  12394578 tgcttgatcttcagaactatcataatttgacatccaatgcttctcctcctttgtacttcagct 12394640  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 12399078 - 12399140
Alignment:
Q  121 tgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgttcttcagct 183  Q
    |||||||||||||||| |||||  | |||||||||||||||||| |||||| |||||||||||    
T  12399078 tgcttgatcttcagaattatcatagtttgacatccaatgcttcttctccttggttcttcagct 12399140  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 12399009 - 12399077
Alignment:
Q  73 ttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatca 142  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||  || |||||||||| ||| ||||    
T  12399009 ttaatgaaaatgacattcattgaccttctaacactt-cagaaccatcatgtttgatcttcaaaaccatca 12399077  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 133
Target Start/End: Complemental strand, 31719755 - 31719660
Alignment:
Q  40 gtagtggtcgtacact-ttgtccttcattgctccttaa--tgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttca 133  Q
    |||||||||||||||| ||||||||| |||  ||||||  ||||| ||||||||||||||||||| | |  | |||||||||||||| |||||||||    
T  31719755 gtagtggtcgtacactgttgtccttc-ttgtaccttaacttgaaaatgacatccattgaccttctgatatcttcagaaccattgtgcatgatcttca 31719660  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 14172157 - 14172061
Alignment:
Q  78 gaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgt 174  Q
    ||||||||| |||||||||| ||| |||  | |||||||||||||||||||||| ||||  ||  |  ||||| |||||||| || |||||||||||    
T  14172157 gaaagtgacgtccattgaccctctgacatgttcagaaccattgtgcttgatctttagaataattcaaacttgatatccaatgattatgctcctttgt 14172061  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 24811242 - 24811146
Alignment:
Q  35 tggaggtagtggtcgtacactttgtccttcattgctccttaa-tgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatct 130  Q
    ||||||||||||||||||||||||||||||  ||  | ||   | ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24811242 tggaggtagtggtcgtacactttgtccttctatgtacattcgctaaaagtgacatccattgaccttctaacacttccagaaccattgtacttgatct 24811146  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 20598305 - 20598351
Alignment:
Q  77 tgaaagtgacatccattgaccttctaacacttccagaaccattgtgc 123  Q
    ||||||||||||||||||||||||||| |  |||| |||||||||||    
T  20598305 tgaaagtgacatccattgaccttctaatatctccaaaaccattgtgc 20598351  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 132
Target Start/End: Complemental strand, 32468624 - 32468525
Alignment:
Q  35 tggaggtagtggtcgtacactttgtccttcattgctccttaa--tgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttc 132  Q
    |||||||||||||||||||||||||||||| |||  |||| |  ||| | ||||||||||||||||||| |||  | |||||||||||||||||||||||    
T  32468624 tggaggtagtggtcgtacactttgtccttctttgtaccttcacttgacaatgacatccattgaccttctgacatattcagaaccattgtgcttgatcttc 32468525  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 21616753 - 21616892
Alignment:
Q  76 atgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatcaacgcttgacatccaatgcttctgctcctttgtt 175  Q
    |||||| |||||| |||||||  ||| | ||||| ||||||| | |||||||||||| |||||||||  |||||||||||| |||||||||||||||| |    
T  21616753 atgaaaatgacattcattgactctctgaaacttc-agaaccactatgcttgatcttctgaactatcatagcttgacatccattgcttctgctcctttggt 21616851  T
Q  176 cttcagctattcatagtcaggtttctagagtctgatgtcca 216  Q
    ||||||| || || |||  || ||| ||||||||| |||||    
T  21616852 cttcagcaatccagagtttggcttccagagtctgaggtcca 21616892  T

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Target: scaffold1681 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1681
Description:

Target: scaffold1681; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 1062 - 1009
Alignment:
Q  83 tgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaa 136  Q
    ||||||||||||||||||| | |  | |||||||||||||| ||||||||||||    
T  1062 tgacatccattgaccttctgatatcttcagaaccattgtgcatgatcttcagaa 1009  T

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