View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8487_low_13 (Length: 218)

Name: NF8487_low_13
Description: NF8487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8487_low_13
NF8487_low_13
[»] chr4 (1 HSPs)
chr4 (1-200)||(15530849-15531048)
[»] chr5 (1 HSPs)
chr5 (1-200)||(39884935-39885135)
[»] chr3 (3 HSPs)
chr3 (1-200)||(29703173-29703373)
chr3 (110-197)||(36949857-36949944)
chr3 (110-197)||(53282586-53282673)
[»] chr8 (1 HSPs)
chr8 (29-197)||(3879079-3879247)
[»] chr2 (2 HSPs)
chr2 (29-197)||(7089507-7089677)
chr2 (29-197)||(33754682-33754852)
[»] chr6 (2 HSPs)
chr6 (133-184)||(932957-933008)
chr6 (141-185)||(28137000-28137044)


Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 15530849 - 15531048
Alignment:
Q  1 tcatcttcaatggaagaagatgaaagaggaagatatactaaagaaattaatcttatgtagttactttcacttagacaatttagatttatttcatgtagnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  15530849 tcatcttcaatggaagaagatgaaagaggaagatatactaaagaaattaatcttatgtagttactttcacttagacaatttagatttatttcatgtactt 15530948  T
Q  101 nnnnnnnnnaaggtttgagaaattgaatcttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatttca 200  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15530949 ttttttttgaaggtttgagaaattgaatcttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatttca 15531048  T

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Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 39885135 - 39884935
Alignment:
Q  1 tcatcttcaatggaagaagatgaaagaggaagatatactaaagaaattaatcttatgtagttactttcacttagacaatttagatttatttcatgtagnn 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  39885135 tcatcttcaatggaagaagatgaaagaggaagatatactgaagaaattaatcttatgtagttactttcacttagacagtttagatttatttcatgtagtt 39885036  T
Q  101 nnnnnnnnn-aaggtttgagaaattgaatcttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatttc 199  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39885035 tttttttttgaaggtttgagaaattgaatcttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatttc 39884936  T
Q  200 a 200  Q
    |    
T  39884935 a 39884935  T

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Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 29703173 - 29703373
Alignment:
Q  1 tcatcttcaatggaagaagatgaaagaggaagatatactaaagaaattaatcttatgtagttactttcacttagacaatttagatttatttcatgtagnn 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  29703173 tcatcttcaatggaagaagatgaaagaggaagatatactgaagaaattaatcttatgtagttactttcacttagacagtttagatttatttcatgtagtt 29703272  T
Q  101 nnnnnnnnn-aaggtttgagaaattgaatcttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatttc 199  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29703273 tttttttttgaaggtttgagaaattgaatcttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatttc 29703372  T
Q  200 a 200  Q
    |    
T  29703373 a 29703373  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 36949857 - 36949944
Alignment:
Q  110 aaggtttgagaaattgaatcttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  36949857 aaggtttgagaaattgaatcttttatgatgatttgtgatgtaaataatgagaaattgaaattggaagtgtttttatcgaaatgtaatt 36949944  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 53282673 - 53282586
Alignment:
Q  110 aaggtttgagaaattgaatcttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatt 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  53282673 aaggtttgagaaattgaatcttttatgatgatttgtgatgtaaataatgagaaattgaaattggaagtgtttttatcgaaatgtaatt 53282586  T

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Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 3879079 - 3879247
Alignment:
Q  29 gaagatatactaaagaaattaatcttatgtagttactttcacttagacaatttagatttatttcatgtagnnnnnnnnnnnaaggtttgagaaattgaat 128  Q
    ||||||||||||||||||||||||||| ||| |||||||||  |||||| ||||||||||||| ||||||           |||||||||||||||||||    
T  3879079 gaagatatactaaagaaattaatcttacgtaattactttcatgtagacagtttagatttattttatgtagttttttttttgaaggtttgagaaattgaat 3879178  T
Q  129 cttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  3879179 cttttatgatgatttgtgatgtaaataatgagaaattgaaattggaagtgtttttatcgaaatgtaatt 3879247  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 7089677 - 7089507
Alignment:
Q  29 gaagatatactaaagaaattaatcttatgtagttactttcacttagacaatttagatttatttcatgtagnnnnnnnnnnn--aaggtttgagaaattga 126  Q
    ||||||||||||||||||||||||||| ||| |||||||||  |||||| ||||||||||||| ||||||             |||||||||||||||||    
T  7089677 gaagatatactaaagaaattaatcttacgtaattactttcatgtagacagtttagatttattttatgtagttttttttttttgaaggtttgagaaattga 7089578  T
Q  127 atcttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  7089577 atcttttatgatgatttgtgatgtaaataatgagaaattgaaattggaagtgtttttatcgaaatgtaatt 7089507  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 33754682 - 33754852
Alignment:
Q  29 gaagatatactaaagaaattaatcttatgtagttactttcacttagacaatttagatttatttcatgtagnnnnnnnnnnn--aaggtttgagaaattga 126  Q
    ||||||||||||||||||||||||||| ||| |||||||||  |||||| ||||||||||||| ||||||             |||||||||||||||||    
T  33754682 gaagatatactaaagaaattaatcttacgtaattactttcatgtagacagtttagatttattttatgtagttttttttttttgaaggtttgagaaattga 33754781  T
Q  127 atcttttatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgtttttatcgaaatataatt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  33754782 atcttttatgatgatttgtgatgtaaataatgagaaattgaaattggaagtgtttttatcgaaatgtaatt 33754852  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 933008 - 932957
Alignment:
Q  133 tatgatgatttgtgatgtaaataatgagaaattgaaattagaagtgttttta 184  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  933008 tatgatgctttgtgatgtaaataatgaggaattgaaattagaagtgttttta 932957  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 28137000 - 28137044
Alignment:
Q  141 tttgtgatgtaaataatgagaaattgaaattagaagtgtttttat 185  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||    
T  28137000 tttgtgatgtaaataaagaggaattgaaattagaagtgtttttat 28137044  T

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