View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8487_low_3 (Length: 386)
Name: NF8487_low_3
Description: NF8487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8487_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 25 - 377
Target Start/End: Complemental strand, 3604260 - 3603907
Alignment:
| Q |
25 |
gagttaacatcactagtcaattgaatnnnnnnnn-tgtacaataatacaatactatcgaaaggaatcctatgagttaattagaaattattagttctagaa |
123 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3604260 |
gagttaacatcactagtcaattgaataaaaaaaaatgtacaataatacaatactatcgaaaggaatcctatgagttaattagaaattattaggtctagaa |
3604161 |
T |
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| Q |
124 |
ggtttctttttcaatttnnnnnnnttaatctgatatattttcaacatgttccttaattttacnnnnnnngcatttatgttgattgtgacaagatgactgc |
223 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
3604160 |
ggtttctttttcaatttaaaaaaattcatctgatatattttcaacatgttccttaattttactttttttgcatttatgttgattgtgacaagatgactac |
3604061 |
T |
|
| Q |
224 |
aaagaagtagatggaagatatttgtgaagttgtatatgcatatcatttgtaacttctgaatataggcttaaaaacaccctctatcaagattcaagaactt |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3604060 |
aaagaagtagatggaagatatttgtgaagttgtatatgcatatcatttgtaacttctgaatataggcttaaaaacactctctatcaagattcaagaactt |
3603961 |
T |
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| Q |
324 |
gcataactgtacgtgcaaggaatcattcaaaggcaatgcccgctgtagaataat |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603960 |
gcataactgtacgtgcaaggaatcattcaaaggcaatgcccgctgtagaataat |
3603907 |
T |
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