View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8487_low_6 (Length: 346)
Name: NF8487_low_6
Description: NF8487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8487_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 26779084 - 26779386
Alignment:
| Q |
1 |
aacaaaagacaatgagttgacaaatgagagattcccaaaggcaaagttattaatttatagaggaatgagtggatgcatgcgtagttcttatatttgagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26779084 |
aacaaaagacaatgagttgacaaatgagagatacccaaaggcaaagttattaatttatagaggaatgagtggatgcatgcgtaattcttatatttgagag |
26779183 |
T |
|
| Q |
101 |
agagattaattttgaattcgaatttcaaatacttaacctccagtcataaaagcgcgttaaagttcatttatgacacaactaattatgacatgttaaatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26779184 |
agagattaattttgaattcgaatttcaaatacttaacctccagtcataaaagcgcgttaaagttcatttatgacacaactaatt---------------- |
26779267 |
T |
|
| Q |
201 |
cgttcattagaaagcaacggagaaaagcaaatccatcataatggaaagcaatgaaggacaactacgtcttttcaaatgctttgaagggaagaaaaattag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26779268 |
-----attagaaagcaacggagaaaagcaaatccatcataatggaaagcaatgaaggacaactacgtcttttcaaatgctttgaagggaagaaaaattag |
26779362 |
T |
|
| Q |
301 |
agttaaagggtagcttgaccttac |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26779363 |
agttaaagggtagcttgaccttac |
26779386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 26781109 - 26781411
Alignment:
| Q |
1 |
aacaaaagacaatgagttgacaaatgagagattcccaaaggcaaagttattaatttatagaggaatgagtggatgcatgcgtagttcttatatttgagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26781109 |
aacaaaagacaatgagttgacaaatgagagatacccaaaggcaaagttattaatttatagaggaatgagtggatgcatgcgtaattcttatatttgagag |
26781208 |
T |
|
| Q |
101 |
agagattaattttgaattcgaatttcaaatacttaacctccagtcataaaagcgcgttaaagttcatttatgacacaactaattatgacatgttaaatgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
26781209 |
agagattaattttgaattcgaatttcaaatacttaacctccagtcataaaagcacgttaaagttcatttatgacacaactaatt---------------- |
26781292 |
T |
|
| Q |
201 |
cgttcattagaaagcaacggagaaaagcaaatccatcataatggaaagcaatgaaggacaactacgtcttttcaaatgctttgaagggaagaaaaattag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26781293 |
-----attagaaagcaacggagaaaagcaaatccatcataatggaaagcaatgaaggacaactacgtcttttcaaatgctttgaagggaagaaaaattag |
26781387 |
T |
|
| Q |
301 |
agttaaagggtagcttgaccttac |
324 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26781388 |
agttaaagggtagcttgaccttac |
26781411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 26450634 - 26450672
Alignment:
| Q |
163 |
ttcatttatgacacaactaattatgacatgttaaatgtc |
201 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26450634 |
ttcatttatgacacaactaattatgacacgttaaatgtc |
26450672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University