View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_1 (Length: 475)
Name: NF8488_low_1
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 37080762 - 37081217
Alignment:
| Q |
1 |
ctgcataatgaagtggaagccttttatatgtgtctgttaaatgtatccaagttggcttctgttgtagtatgtccttcagcatttctgattacacatgtat |
100 |
Q |
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| T |
37080762 |
ctgcataatgaagtggaagccttttatatgtgtctgttaaatgtatccaagttggcttctgttgtagtatgtccttcagcatttctgattacacatgtat |
37080861 |
T |
|
| Q |
101 |
aattgtgagttagatcaaatataaaaatgtattgcttattttagaagacgcccttataaattggaatcgacatgaaggcaagtgaagtctaaccaataag |
200 |
Q |
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| T |
37080862 |
aattgtgagttagatcaaatataaaaatgtattgcttactttagaagacgcccttataaattggagtcgacatgaaggcaagtgaagtctaaccaataag |
37080961 |
T |
|
| Q |
201 |
ttttttaactatgattgaaactcgggttctctagaataatttttcgttaactgtaactatttatactaattaactagaactagttactaaaccgcttgat |
300 |
Q |
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| T |
37080962 |
ttttttaactatgattgaaactcgggttctctcgaataatttttcgttaactgtaactatttatac----taactagaactagttactaaaccgcttgat |
37081057 |
T |
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| Q |
301 |
actgatcatttgatttcatggtcatagatttaatatttaacatgaatataaaaagataaggcataggctaccctcaacaactactgaaatttatccacat |
400 |
Q |
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| T |
37081058 |
actaatcatttgatttcatggtcatagattcaatatttaacatgaatgtaaaaagataaggcataggctaccctcaacaactactgaaatttatccatat |
37081157 |
T |
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| Q |
401 |
gagtaaatttattaccttgattctgcttcatgattgctgctacaacgggtgataatcctt |
460 |
Q |
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| T |
37081158 |
gagtaaatttattaccttgattctgcttcatgattgctgctacaacgggtgataatcctt |
37081217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37070929 - 37071059
Alignment:
| Q |
1 |
ctgcataatgaagtggaagccttttatatgtgtctgttaaatgtatccaagttggcttctgttgtagtatgtccttcagcatttctgattacacatgtat |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||| |||||| || | ||||||||| || |||||||||| |
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| T |
37070929 |
ctgcataatgaagtggaagcctttcatatgtgtccgttgaatgtatccaagttggcttcttttgcagtatgacccttagcatttctaatcacacatgtat |
37071028 |
T |
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| Q |
101 |
aattgtgagttagatcaaatataaaaatgta |
131 |
Q |
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| T |
37071029 |
aattgtgagttagatcaaatataaaaatgta |
37071059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 463
Target Start/End: Original strand, 37071326 - 37071379
Alignment:
| Q |
410 |
tattaccttgattctgcttcatgattgctgctacaacgggtgataatccttttg |
463 |
Q |
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| T |
37071326 |
tattaccttgattccgcttcatgattgctgctacgacgggcgataatccctttg |
37071379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 458
Target Start/End: Complemental strand, 36946919 - 36946874
Alignment:
| Q |
413 |
taccttgattctgcttcatgattgctgctacaacgggtgataatcc |
458 |
Q |
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| T |
36946919 |
taccttgattctgtttcatgattgctgctacaatgggcgataatcc |
36946874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 455
Target Start/End: Complemental strand, 36952830 - 36952788
Alignment:
| Q |
413 |
taccttgattctgcttcatgattgctgctacaacgggtgataa |
455 |
Q |
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| T |
36952830 |
taccttgattccgcttcaagattgctgctacaacaggtgataa |
36952788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 37071098 - 37071179
Alignment:
| Q |
145 |
aagacgcccttataaattggaatcgacatgaaggcaagtgaagtctaaccaataagtttt-ttaactatgattgaaactcgg |
225 |
Q |
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| T |
37071098 |
aagatgccctgataatttggattcgacataaaggtaagtgaaatctaacaaagaattttttttaactatgatttaaactcgg |
37071179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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