View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_10 (Length: 375)
Name: NF8488_low_10
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 7972191 - 7972544
Alignment:
| Q |
7 |
atgaataaacttacctcaaggaactaattcataaatcaacaaatatccaagcagaaatccttgatatttgcttttccgtaaatataaagaattaacttat |
106 |
Q |
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| T |
7972191 |
atgaataaacttacctcaaggaactaattcataaatcaacaaatatccaagcagaaatccttgatatttgcttttctgtaaatataaagaattaatttat |
7972290 |
T |
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| Q |
107 |
aagtttgataattggattagtttacaagtgttttagataaa-ttctatgcctttggtaacaaagtttttctattttacaaacactcaaagcttccgc--- |
202 |
Q |
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| T |
7972291 |
aagtttgataattggattagtttacaattgttttagataaaattctatgcctttggtaacaaagtttttctattttacaaacactcaaagcttccgccgc |
7972390 |
T |
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| Q |
203 |
cacagcaccaatgattcatcatttcaatttgcttcaatttcacacattctcattctccacctcaaccacaacctaattcaaccactctcttcttcccaat |
302 |
Q |
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| T |
7972391 |
cacagcaccaatgattcatcatttcaatttgcttcaatttcacacattctcattctccatctcaaccacaacctaattcaactactctcttcttcccaat |
7972490 |
T |
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| Q |
303 |
aaatccacctttcacctcccaccactacaacaaactcatcctctacgtcgccgc |
356 |
Q |
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| T |
7972491 |
aaatccacctttcacctcccaccactacaacaaactcatcctctaggtcgccgc |
7972544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 7972769 - 7972813
Alignment:
| Q |
234 |
cttcaatttcacacattctcattctccacctcaaccacaacctaa |
278 |
Q |
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|||||| ||||||||||||||||||||| ||| ||| |||||||| |
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| T |
7972769 |
cttcaaattcacacattctcattctccatctccacctcaacctaa |
7972813 |
T |
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