View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8488_low_12 (Length: 352)
Name: NF8488_low_12
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 19278191 - 19278493
Alignment:
| Q |
1 |
cacaaaacagagaagctgcaaagaaaagccgtctaaggaaaaaggtgtgtcttccattacacattgtgcagtaccacccacaccacaaatacaatatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
19278191 |
cacaaaacagagaagctgcaaagaaaagccgtctgaggaaaaaggtgtgtcttccattacacattgtgcagtaccacccac-----aaatacaaaatttt |
19278285 |
T |
|
| Q |
101 |
cttattaatttttataagcagtgaactattgttaaaatggagtcatttatcttctgcaactagttttatactgtagccaagtgcagactgttagattaag |
200 |
Q |
| |
|
||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
19278286 |
ctttttaatttttataagcaatgaaatattgttaaaatggagtcatttatcttctgcaactagttttatattgtagccaagtgcagactattagattaag |
19278385 |
T |
|
| Q |
201 |
agagaaaaatttcatctcttaatctgacggtctgtcgaggactacacaatatctattgtgttaaaacaaagaattagagatactcttaagtcattacatt |
300 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19278386 |
agagaaaattttcatctcttaatctaacggtctgtcgagaactacacaatatctattgtgttaaaacaaagaattacagatactcttaagtcattacatt |
19278485 |
T |
|
| Q |
301 |
gttatgtt |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
19278486 |
gttatgtt |
19278493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36333945 - 36333990
Alignment:
| Q |
1 |
cacaaaacagagaagctgcaaagaaaagccgtctaaggaaaaaggt |
46 |
Q |
| |
|
|||||||||| || ||||||| |||||| ||||||||||||||||| |
|
|
| T |
36333945 |
cacaaaacagggaggctgcaaggaaaagtcgtctaaggaaaaaggt |
36333990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University