View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_14 (Length: 339)
Name: NF8488_low_14
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 45706604 - 45706273
Alignment:
| Q |
1 |
tttgcgcatatacttgtatgtttatttgtttcagttaattaagcggtattcatcatcagtatagtaaataagagaattataattatacatgagttattag |
100 |
Q |
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| T |
45706604 |
tttgcgcatatacttgtatgtttatttgtttcagttaattaagcggtattcatcatcagtatagtaaataagagaattataattatacgtgagttattag |
45706505 |
T |
|
| Q |
101 |
attatcactaatcaactttttacgctctataattgcagcatcagcaagaagatgaagctagcacaacattgatccgattattatatctttcaataatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45706504 |
attatcactaatcaactttttacgctctataattgcagcatcagcaagaagatgaagctagcacaacattgatccgattattatatctttcaataatttt |
45706405 |
T |
|
| Q |
201 |
ctttctgttaatgtatttgtagtgagaattagatagttgggttttgttttgcattaagtttgttaagaaatgaagcaaaagttagagaagaaaaaatgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
45706404 |
ctttctgttaatgtatttgtagtgagaattagctagttgggttttgttttgcattaagtttattaagaaatgcagcaaaagttagagaagaaaaaatgaa |
45706305 |
T |
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| Q |
301 |
taaaattcaacaaggatttttgatgtccatct |
332 |
Q |
| |
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||||||||||||||||||||| |||||||||| |
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| T |
45706304 |
taaaattcaacaaggattttttatgtccatct |
45706273 |
T |
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