View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_15 (Length: 332)
Name: NF8488_low_15
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 2 - 321
Target Start/End: Original strand, 1087429 - 1087748
Alignment:
| Q |
2 |
tggaaaaattgggatgatccgtcttcgggagattttacttgggctattgtccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattc |
101 |
Q |
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| T |
1087429 |
tggaaaagttgggacgatccatcttcgggagatttaacttggggtattgtccttagtagtaatccagaagttgtattgaaaaaaggatcagttgagattc |
1087528 |
T |
|
| Q |
102 |
atagaactggcccttggaatggagttggatttagtggagcacctgtggagattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatga |
201 |
Q |
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| T |
1087529 |
atagaactggcccttggaatggagttggatttagtggagcacctgtggagattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatga |
1087628 |
T |
|
| Q |
202 |
agtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacaactagtcatcgagaacgtgttaattggattccagaa |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1087629 |
agtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacaactagtcatcgcgaacgtgttaattggattccagaa |
1087728 |
T |
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| Q |
302 |
gacgatacttggagtattat |
321 |
Q |
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||||||||||||||| |||| |
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| T |
1087729 |
gacgatacttggagtgttat |
1087748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 1103985 - 1104245
Alignment:
| Q |
2 |
tggaaaaattgggatgatccgtcttcgggagattttacttgggctattgtccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattc |
101 |
Q |
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| T |
1103985 |
tggaaaaattgggatgatccgtcttcgggagattttacttgggctattgtccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagattc |
1104084 |
T |
|
| Q |
102 |
atagaactggcccttggaatggagttggatttagtggagcacctgtggagattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatga |
201 |
Q |
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| T |
1104085 |
ataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaa---acaaaatttgtgaacaatacaaatga |
1104181 |
T |
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| Q |
202 |
agtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaaca |
265 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104182 |
agtttactacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaaca |
1104245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1046954 - 1047217
Alignment:
| Q |
1 |
ttggaaaaattgggatgatccgtcttcgggagattttacttgggctattgtccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagatt |
100 |
Q |
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||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
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| T |
1046954 |
ttggaaaaattgggacgatccatcttcgggagatttaacttggggtattgtccttcgtagtaatccagaaattgttttgaaaagaggatcagttgaaatt |
1047053 |
T |
|
| Q |
101 |
catagaactggcccttggaatggagttggatttagtggagcacctgtggagattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatg |
200 |
Q |
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| T |
1047054 |
cataggagtggtccttggaatggagttggatttagtggagcgcctatggagattgttacatcaactgttgttgttgcaagatctgtgaacaattcaaatg |
1047153 |
T |
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| Q |
201 |
aagtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac |
264 |
Q |
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| T |
1047154 |
aggtttattactcatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac |
1047217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 1071767 - 1072030
Alignment:
| Q |
1 |
ttggaaaaattgggatgatccgtcttcgggagattttacttgggctattgtccttcgtagtaatccagaaattgtattgaaaaaaggatcagttgagatt |
100 |
Q |
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||||||||||||||| ||||| || ||||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1071767 |
ttggaaaaattgggacgatccatcatcgggagatttaacatggggtattgtccttcatagtaatccagaaattgtattgaaaaaaggatcagttgaaatt |
1071866 |
T |
|
| Q |
101 |
catagaactggcccttggaatggagttggatttagtggagcacctgtggagattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatg |
200 |
Q |
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|| || | ||| ||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||| || |||||| | |||| ||||||||||| |
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| T |
1071867 |
cacaggagtggtccttggaatggagttggatttagtggagcacctatggagattattacgtcaagtgttatagctacaacacctgtgatcaattcaaatg |
1071966 |
T |
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| Q |
201 |
aagtttattacatatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaac |
264 |
Q |
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||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1071967 |
aagtttatttcacatatagtcttgtaaacaagagtatggtttcaataacttatttgaaccaaac |
1072030 |
T |
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