View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_16 (Length: 322)
Name: NF8488_low_16
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 22561082 - 22561382
Alignment:
| Q |
6 |
agaagcagagattgacaagcagatcagtcaagaggtacaagctcatattgaaaaaacaacattccaaacctatggtgcttttgttccactcatctaaatc |
105 |
Q |
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| T |
22561082 |
agaagctgacattgacaagcagatcagtcaagaggtacaagctcatattgacaaaacaacattccaaacctatggtgcttttgttccactcatctaaatc |
22561181 |
T |
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| Q |
106 |
ccatcattatatcttccgataaccaacaagttactttcacctttgtcattaataaccaaattgtttgtatcttcgctatatatgcctcaaccaatcatat |
205 |
Q |
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| T |
22561182 |
acatcattatatcttcaaataaccaacaagttactttcacctttgtcattaataatcaaactgtttgtatctcagctatatatgcctcaaccaatcatat |
22561281 |
T |
|
| Q |
206 |
aactagaagacatctttggaacactttgcaaaaccttcaaacacaattgaaccttccttggtgctcaataggtgattttaacgctattttaggctcacat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22561282 |
aactagaagacatctttggaacactttgcaaaaccttcaaacacaattgaaccttccttggtgctcaataggtgattttaacgctattttaggctcacat |
22561381 |
T |
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| Q |
306 |
g |
306 |
Q |
| |
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| T |
22561382 |
g |
22561382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 23208069 - 23208020
Alignment:
| Q |
244 |
aaacacaattgaaccttccttggtgctcaataggtgattttaacgctatt |
293 |
Q |
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|||||||| | |||||||||||||| ||||||||||||||| || ||||| |
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| T |
23208069 |
aaacacaactaaaccttccttggtgttcaataggtgattttcactctatt |
23208020 |
T |
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